RNA id: AMCG00000849


Basic Information

Item Value
RNA id AMCG00000849
length 2161
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00000849
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5397325 ~ 5404570 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGGCTCAGTGACGTATGCAGTTGCTTTAGATACGTAGATcgcgttttgttttgttttgtttctggtttGAATGGAAAAGTTCTAAAGAACACACCATgaataaatcagaaaatgaacaagagGCGGTCCATCCTGAAATACTGTCTTTAGCTGCTGAAATTGCGGATTGTACGCGAGAAGATTTGCCACTtcttcttttgaaaataaaagACATTTTAGATAAAGAATCACTGGGGAGTAAACAGctggaaaaactgaaacaagACATCTACTCCTATGACCTCATTCAGTATTTTATGCTAATCTTAAAGCAAGATATCTCTAGAATTCAAGGTGGCTGGTCAACTGCTGTTCAGTTAGCAGAACTCTTAAGTCTGTGTTGTGTGGATCTGGATCctaaagaagaaaagaaggaatTTTATGACAATGTTCTTCCTGCAGCAGCCGACTCTATGTTACTGCTGGGAAGACACTTGCAGGCACGGTTCTACGTTGCTGTCAAGGATGAACAAAAAGCGTCCTTATTTCGCAACCTTCGCAAAGTGACCAACTCCATTTGTTGCCTGTGCAGAGGACACATTCCgttaattaaaacaaCTCTGCAGTCGGATCATTTTCTGCAGTTAATGCTGAGTGAAGATGTTGAATCTGACATCGTCGTGTTGTCACTGTTACAAAATCTTCTCAGAATTAATAGcGTGGTTCCGATGGAAATTGCGGAGAAAACAGTGGAGGACTTTTCAGATGAGCTCATTTTCAGACTCATATCAACAAACAATCCTGTGGTTGGAAGTGCCGCCACAAAGGCACTCGTTTTACTGGCAAGCAGTCCTGCCATAAAGACCATCTGTAGAAAGTATGAAGGTTCCCGCTTTCCCTTGAGAGAGAAATGGACCGGAAAAGGTTTTGACAAAGAACTTGGTCAGCTTTTGGAGCTACTCCATGCTGCATCACACCAGCCAGGGGAAGTGAAGAGATTACATCAAGCAGCATCGTTGATCCAAGCAGCCTGGAGATCCTATAAGACGAGAAAACGAATGAAAAAACTCCCAAGTGCCGTCAGTAGAATTCAGAAGAGTTTCCGAGAGCGGAAGAAGCGTGAATCTCTGCTGTCCCAGAGGCAGAAGGAGGCACAGGAACTCAGACAGCAGCTGCAGCTCAGCAGACAGAGAGCCCTGCGGGAGTTCAGACAGAGACAGCTGGACCTGCTGGAGATAGTCCCCGCAGGTCTGGTGGACCGGTTTTTACATGAACAGGAACAGAGGGCTGCAGTCGTGATCCAGAAGCAATGGAGGGGCCACAGAGAACGCAGGAAATTCCACCAGCAGAAGCAGGCGATGAAAGAGTTTAAGGCCGCCGTGACTTTACAGAGAGCATCTCCTTCAGTGTTGATTGACAGCTGTAAGGAACTCCATCAGCAGACACAAGAAATGCTCAGACAGCATCTGATGAACCGGACGCTACACCGGAAGGCAGAGCAGCACCGGAAGTCACTCATTACACAGATTAACAGTGAAGTGGACCTGCTAATGAatgctccaggtttgaaagACGCTACAGAACAAGACATCAGCAAGTTCATGAGCCGGAGTGTTCCTGTGGCAGCCCGAGCCAAGCAATCCCACAACACCTTGCTTCAGTTCAATCGCTGGCCCTGGTGGAAGAAGCTCGGAGACGAATTTCTGGACCCTGAACAATTACCCAAAGATAACATGAATATTGATTTTGAGACATTGTACTTGGGTGGTAGCTGATGAACTTGATGATGCGCATTCTAATAATCTAACAAAACCTCAGTGGATATCTCTgacatttaattactttttatctGCTCTTTGTCTCGTGTTTTGTTCCTGTGTTCATTGAATTTTTAAGACTTCGAGTTAGGTAGGATGGTAATTTCTAACATAACTAGCTACATTTTGACATGTAAATATGCATAGAACATATTTTGTACGTATTAATCTTTCTCCACTCTTTTTAAGTTAAattgtacagtattattatgtgataaattattttatataaaactgcatattgtttttatctGATTAGAATGATTTCTGTTTAATACTTCCTTCAGTGTACAGAATAGTGTCTTCACAAGATCCCTTATATGGCTTAAAACATTAACAGGACATTAAACATTTCATAGCCAC

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0036372 opsin transport biological_process

KEGG:

id description
K16774 IQCB1, NPHP5; IQ calmodulin-binding motif-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158756 lncRNA upstream 47083 5349982 ~ 5350242 (+) True G126621
TU158701 lncRNA upstream 264369 5132374 ~ 5132956 (+) True G126574
TU158700 lncRNA upstream 265334 5131718 ~ 5131991 (+) True G126573
TU158698 lncRNA upstream 266664 5128507 ~ 5130661 (+) True G126572
TU158696 lncRNA upstream 269669 5127314 ~ 5127656 (+) True G126570
TU158802 lncRNA downstream 60281 5464851 ~ 5465981 (+) False AMCG00000848
TU158805 lncRNA downstream 62412 5466982 ~ 5467528 (+) True G126667
TU158853 lncRNA downstream 165400 5569970 ~ 5571932 (+) True G126697
TU158870 lncRNA downstream 314698 5719268 ~ 5799635 (+) True G126714
TU158964 lncRNA downstream 796339 6200909 ~ 6201605 (+) True G126781
AMCG00000845 mRNA upstream 64619 5316197 ~ 5332706 (+) True AMCG00000845
AMCG00000844 mRNA upstream 131620 5221997 ~ 5265705 (+) True AMCG00000844
AMCG00000841 mRNA upstream 281341 5081856 ~ 5115984 (+) True AMCG00000841
AMCG00000840 mRNA upstream 349241 5039948 ~ 5048084 (+) True AMCG00000840
AMCG00000837 mRNA upstream 362628 5025295 ~ 5034697 (+) True AMCG00000837
AMCG00000847 mRNA downstream 21591 5426161 ~ 5441254 (+) True AMCG00000847
AMCG00000848 mRNA downstream 56731 5461301 ~ 5464884 (+) True AMCG00000848
AMCG00000857 mRNA downstream 68524 5473094 ~ 5487499 (+) True AMCG00000857
AMCG00000855 mRNA downstream 93052 5497622 ~ 5556669 (+) True AMCG00000855
AMCG00000856 mRNA downstream 152881 5557451 ~ 5568381 (+) True AMCG00000856
TU157662 other upstream 3701078 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 3796686 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 5055554 339640 ~ 341771 (+) False G125561
TU159397 other downstream 3212629 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 4743287 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 6595094 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 9765341 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 10004542 15409112 ~ 15420880 (+) False G128823

Expression Profile