RNA id: AMCG00000852


Basic Information

Item Value
RNA id AMCG00000852
length 3001
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00000852
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5381140 ~ 5391829 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGTCCTGGCAACGCCGTGAGTGAGTTCAGGAAACCCGGGTTTATTAGCGGTCAGCAATACAAAACCTCATCTCTCAGACAAACACAGCACGTCGGCAGGACGCAAGGGGCTGCGAGGATCACGGCATTGCATCCCCAGCTGGCTTGGTTTCGTGTCTTGATCTGTGCGTTATGAtgtttttcaaactgtttttgAGGAGCGGATCTCAGGTCTGCAGACTGCAATGTGAGCCGGCGCTGAGGAGCGTCCTGTCCCGCCGCAGTCCTGCGTCTTCCTCCGCCGCGTTGTCCAAGATTAAAAGCATGGATGAACTGCAGGGACCCAGCTTCATGACATCTTTGTATTGGCTTTTCGTGAAGGGATACTTCAATAAGACCCACCAGATGCAAATTGAGCACACAAAGATCTACGGCCCCCTGTGGAAGTCCAAGTACGGCCCCTTGGTGGTTGTAAACGTGGCGTCCGCCGAGCTGATCGAGCAGGTGCTGCGGCAGGAGGGGAAGCACCCGATCCGGTCGGACATGCCCCACTGGAGAGGCTACCGGGAGCTCCGCAAACAGGCCTACGGGCCCCTCACTGGGTTGGGGGCAGAGTGGCAGTGCATCAGAAGTGTACTGAACCCACGGATGCTGAAGCCAAAGCATGTGTCCACCTTCTCCCCCGCCATCAACCAAGTGGTGACAGACTTCATCCAGAGAGTGCAGTGGCTCCGAGAGAAGCAGGAAGGCGGGGTTATGGTGCATGATGTGGCTGGGGAACTCTACAAATTTGCATTCGAAGGAATTTGCTCCGTGCTGTTCGAGACCCGAATGGGCTGCCTCAATGAACACATTCCAGAGGAAACCCAGAAGTTTATCGACTCTGTGGGAGAGATGTTTCGCTTGTCTCCAATCTTAGTGCTGTTTCCTCAGTTCCTTTGGCCCTATCTGCCCTTCTGGAAACACTTTGTGGCAGTCTGGGACCATCTGTTCAAAGTTGCCCAGAAGTTGATTGACAACAAGGTGATTGAGATCCAGGAGAAGGTCAATAAAGGTGAGCCAATTGAGGGCGAATATCTGACCCACCTCCTGGTCAGTGACAAGATGTCCATCACACAGATCCTGGGAAGCATTACGGAATTGCTGCTGGCTGGCGTGGACACAACATCCAACACCATTTCATGGGCGCTGTACCACCTGGCACGAGAGCCAGAGATACAGGAAAAACTGCACCGGGAGGTGGACAGTGTTTGCCCAGGAGATAAAATACCCACAAGCGAAGACATTGCCAAGATGGTGTGGTTAAAGGCAATAGTGAGAGAAACACTAAGACTGTACCCGGTTGTGCCAGGTAATGCCCGAGTCACGGCTGAAAAAGAGATTGTGACTCTCTTCCACCTCTGTCACTATGCTGTGTCCTACGATGAGTGCAACTTCCCCGAGCCTCAGACCTTCCTGCCTCAACGCTGGCTCCGAGGAGAGGAGAGGTTCAAGCAGCACCCATTCAGCTCGGTGCCCTTCGGCTTTGGCATCCGGGCCTGCTTGGGCAAGAGGGTGGCTGAGCTGGAGATGTACTGTATTCTGTCCCGGcTGATGAAACACTTTGAAGTTCGCCCTGATCCTTcgggaaaaacagtcaaaccGATAACCAGGACTCTCCTCGTACCCGGGACACCTATCAGCCTGCAGTTTCGGGATAGGAGATTGAAGCAATCagagtaaataaagaaaaacaaaaagtaacaaCATATGGGCACTGTTTAAACATGGTAGCGTTTTATAGTGTTTAGTGTTTATTCTGTTACTAAGTTAATTAAAACTGCGTGAAGGGAAGCAGCTGAGAGTTGAATTCGCCAATTTGTCTCAGTTGACCAAACGACTCTTAAGATTCAAGCACGGCACTGCCCGTCTCTGCCTCTTCAAACGCTGTCATTTATACGATATTCATATAAATCATCCAGCATAAAAAATGCtattgattaatatatttttgtgttcgTTTTGTGACTGACTCATTTTATAACACAataatccatatattttatggtaatttgctGTTCCGGGTGTTGCTCTAGCGCTGACAGGACTGCTGTGCTGTAGATGCTGTCAGACAGGTATGAATTTCTTTCCCAAATATTGCTCTTTCATAGTCCATGTGGGTCGGCAATAAGGAGATTGAATGGTGTGAGATTTAGCTGAACCTTCAAGCTCTAAGCCACTCTCTAGAGTAGCCAGGTTAAAATGGGATTTTGCAGTAAATAAGgggagaaatgtattaaaagacaGAAGTTTTTTAGATTCCAGTGCTAGGCTTATGTAGTATTagaataatgtatattaatgtttgaaaaacCATGTAAACCATGTTGAATTAAGTAATCTGTTACACAGCTTtacaatcatcatcattaccATCGTAGATTAGTCAGAAATGTGTATGTTGAAGTCAGTTTTTCCTAACTACATTCTGCGATTTTGCACCTGATTTTCCAGATGTCTCTTTTAAATGTGCCAAGACAGGAAGTGACATCTGTTCGATCTGTTAgtgttcctgttttttcttaTCTAACTATCTCAAAAcatcatttgatatttttaagaCGAGACATTCCAAAGCAAACACGCATTCCTAGAATGAATAACCATACATAGCCTGGATAATGATCCTATAATAATAGGTCGTTAATGTATATCAGTGAGGTTtacaaaatagacaaaatagTTTGCTTATAGAATAATAGATGcttgttaatttgttattctGAGAAGTGTACCTTGGAAAATGGGTTTTGGACctttcaagttttattttggtatttagttgaattgtttagtttttactgACAAACAAAAAGGAGTAAGTGCCTGAAAGTATGTATTATGCATTacattgtgtatgtttgtaatAATGCCAGTGTTCACATTTAGAATGATATCAAAATAACCCCAATAAAGTCACTTCAAAGAGAAATCTGTTTTAtgatcaaaatgcatttcatgagCTTAAGTGGTAGATCATTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17960 CYP49A; cytochrome P450 family 49 subfamily A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158766 lncRNA downstream 8681 5372249 ~ 5372459 (-) True G126631
TU158684 lncRNA downstream 262104 5116054 ~ 5119036 (-) True G126563
TU158674 lncRNA downstream 346443 5013868 ~ 5034697 (-) True G126554
TU158667 lncRNA downstream 418610 4957138 ~ 4962530 (-) False AMCG00000838
TU158563 lncRNA downstream 603356 4773581 ~ 4777784 (-) True G126476
TU158803 lncRNA upstream 70738 5462567 ~ 5464052 (-) True G126665
TU158854 lncRNA upstream 178115 5569944 ~ 5572133 (-) True G126698
TU158942 lncRNA upstream 551557 5943386 ~ 5949894 (-) True G126767
TU159089 lncRNA upstream 942884 6334713 ~ 6335866 (-) True G126873
TU159108 lncRNA upstream 989134 6380963 ~ 6381248 (-) True G126887
AMCG00000854 mRNA downstream 10985 5354386 ~ 5370155 (-) True AMCG00000854
AMCG00000846 mRNA downstream 65044 5279544 ~ 5316096 (-) True AMCG00000846
AMCG00000843 mRNA downstream 206730 5137957 ~ 5174410 (-) True AMCG00000843
AMCG00000842 mRNA downstream 248296 5121107 ~ 5132844 (-) True AMCG00000842
AMCG00000839 mRNA downstream 356249 5014369 ~ 5024891 (-) True AMCG00000839
AMCG00000850 mRNA upstream 773 5392602 ~ 5396386 (-) True AMCG00000850
AMCG00000851 mRNA upstream 48201 5440030 ~ 5446252 (-) True AMCG00000851
AMCG00000853 mRNA upstream 58231 5450060 ~ 5460804 (-) True AMCG00000853
AMCG00000858 mRNA upstream 208120 5599949 ~ 5639241 (-) True AMCG00000858
AMCG00000860 mRNA upstream 390523 5782352 ~ 5789779 (-) True AMCG00000860
TU158503 other downstream 744624 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 1724579 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 2231888 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 2247323 3131714 ~ 3133817 (-) False G126096
TU158081 other downstream 2331189 3044257 ~ 3049951 (-) True AMCG00000771
TU158856 other upstream 180876 5572705 ~ 5573027 (-) True G126700
TU159187 other upstream 1320129 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 2238086 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 4027167 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 4882858 10274687 ~ 10278211 (-) True G127443

Expression Profile