RNA id: AMCG00000875


Basic Information

Item Value
RNA id AMCG00000875
length 537
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00000875
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6127419 ~ 6142577 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGTACAGTGCTTCTGCCTTTGGATTTGCTttTGACGCCACGCTGGATGTGTTATCCTCCATCATCGTGCTGTGGCGTTACAGCAACGCGGCCGCTGTGCACTCTGCTCACCGGGAATACATAGCCTGTGTGATCCTCGGAGTTGTGTTCATTCTGTCATCCATGTGCATCTTGGGTAAAGCCATCCATGATCTGGCGACACAACTGCTCCCAGAAGTGGATGACTTCCTGTTCAGCGTGTCCATCCTGAGTGGGATACTGTGCATCATCCTGGCGGTGCTGAAGTTCATGCTAGGGAGGGTGCTGACCAGCAGAGCTTTGATCACAGATGGGTTCAACTCTCTCGTCGGGGGAATCATGGGCTTCTCTATACTAATAAGTGCCGAGGTTTTCCGACACCATCCTCAGGTCTGGTATCTCGATGGGACAATAGGTGTCCTTATTGGGCTCATCATTTTCTCCTACGGAGTGAAGTTGCTAATTGACATGGTCCCTCGAGTGAGACAAACGCGTCACTACGAGAGGTTCGAGTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158942 lncRNA downstream 177525 5943386 ~ 5949894 (-) True G126767
TU158854 lncRNA downstream 555286 5569944 ~ 5572133 (-) True G126698
TU158803 lncRNA downstream 663367 5462567 ~ 5464052 (-) True G126665
TU158766 lncRNA downstream 754960 5372249 ~ 5372459 (-) True G126631
TU158684 lncRNA downstream 1008383 5116054 ~ 5119036 (-) True G126563
TU159089 lncRNA upstream 192136 6334713 ~ 6335866 (-) True G126873
TU159108 lncRNA upstream 238386 6380963 ~ 6381248 (-) True G126887
TU159209 lncRNA upstream 977667 7120244 ~ 7125041 (-) True G126977
TU159291 lncRNA upstream 1487338 7629915 ~ 7645722 (-) False G127039
TU159409 lncRNA upstream 2496019 8638596 ~ 8639883 (-) True G127145
AMCG00000866 mRNA downstream 117002 5985104 ~ 6010417 (-) True AMCG00000866
AMCG00000865 mRNA downstream 203713 5922771 ~ 5923706 (-) True AMCG00000865
AMCG00000863 mRNA downstream 234665 5860845 ~ 5892754 (-) True AMCG00000863
AMCG00000864 mRNA downstream 271132 5822538 ~ 5856287 (-) True AMCG00000864
AMCG00000861 mRNA downstream 315537 5799381 ~ 5811882 (-) True AMCG00000861
AMCG00000874 mRNA upstream 56014 6198591 ~ 6211393 (-) True AMCG00000874
AMCG00000873 mRNA upstream 111323 6253900 ~ 6289579 (-) True AMCG00000873
AMCG00000880 mRNA upstream 197775 6340352 ~ 6356387 (-) True AMCG00000880
AMCG00000883 mRNA upstream 408435 6551012 ~ 6556951 (-) True AMCG00000883
AMCG00000886 mRNA upstream 456275 6598852 ~ 6601477 (-) True AMCG00000886
TU158856 other downstream 554392 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 1490903 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 2470858 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 2978167 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 2993602 3131714 ~ 3133817 (-) False G126096
TU159187 other upstream 569381 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 1487338 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 3276419 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 4132110 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 4555130 10697707 ~ 10700348 (-) False AMCG00000960

Expression Profile