RNA id: AMCG00000876


Basic Information

Item Value
RNA id AMCG00000876
length 2000
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00000876
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6362207 ~ 6365270 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGCGTCACTACAATACCCAGAACCGCCGTGTTGCCAGGGTCACAGACAGCATCTGAAGAAGGAAGTAGTTGTACTTTAACGGATTTtatgtattcttattttaaaggaaaatacttttcaaagcttttcagaATCAGGAAGACACTGGCAACACTCGTGCCAGTAATCAGTCCTCAATGACGGCAGACAGCGCCGCAGCCCGGGCCGTGGTGGTGTCCGGGGTCCCGGAGGGGCTGCTGGACTGCGGCACCATGGCGGACAAGCTGGTCATCCACTTCCAAAGAGCCAGGAGCGGAGGCGGGGACGTGGCGGCCATCCAGTACCCCACATCCTTCAGGGGTGTCGCCTTCGTCATGTTTGAAGAGCAGAAAGATGCAGCCCGGGTTCTGCAAGTGCAACAGGTGCTGCAAGATGAAGCATTGCCAAAGGGCTATCCTCTGACCGTGTTTCAGTTCACTCAGGATGTGTTTTGCTATGCGTTCGCAGAAGTGGACTTCTCCCTGTTCAGTGATCATGAGCGGCTGATCGAGGATCTTCAGGCGACACACCGCTGTGTCAGGATCTCCTCTCTGCAGCCACACGGCAGGGCTCTGCTGGAGGGGCCCTTCAAAGCCTTGAAGGAAGTGAGGGAAGCGCTCTTAAGAGCTGGTGGGTATGAGAGTCCTCTCGGCAGCAGAGAGGTTCAGCTAAGCCCAGAGAGGTCGGGGAAACCGTCAGTAATGGACCCCCCCGGCCAACGGGAGTGCTCGGTTTGGGTGGATACCAACGTGTTCAGGTACATTCAGCATTTCAGGCAGGAAGACTTTGATCTGTGTTTGCGTAAGTATGACGTCGCGCCTGCCATAGAGGTGCAAGGAGAGGTGACCAAAGTTACTCTGAGCACCAAAGGGCAGCCTTGTGTCGGAGCCCAGGCAGAGCTTGAGCTGCTGATCGCCGGCCTGCAGCCGCGTCTGAGGACTCAGATCATCCAGCACACCAGTGACGACCGACGCCAGCGGGAGGAGCTGTTACGGATCTGTAAGGAATCGAACCACATTCATGACACGGTTCTTATCATTCCGTCAGAAGCTCATATTGAGATCGTCGGCCCGTCTTCCAGCTGTTTCTTGTTCTGTCAGATGGTCGAGGGCAAACTGAAGGCTGCATCCGCTGACGGTTCAGACACGGCTTTGGGTGCAGccgcctcctccagctcctatAACACGGGGCGACTAAGAGAGCCATATTCTCTCCGCAGTGGACCAATGGACCCGATCCGTAGCCCAGAATACCATTGAACTGTTGAAAACCTACCCAGGAAGCCAACTAAACAAAGAATTATATTGTACATACTTATGTACACACAATTAATCGGGTTGATAATGATctgaatatttgaaataatgtatgtagTTCAATGAGCAGAATGAAGACGTGCTTTATTGACTAAATATTACTGACGTTCACTTGACGACTTTTGCTTATCAGTTCATACTTGCTGGAAAAGCCAGaatgtttgttcattatttatcaaCTTAGTAGTTcgtcaaaaatacaaattcccGCACATTTCTACACAAACCTGTACAATAGTTGTGTTATGGATGGTTTTGCAAACAATTGAGGTGTATAGGaatgtttatttacacttttctggttaaatgatttttttaattaaaggtttgttgtacattttctgACAGCTAAACATAGTTACAGTATAACCCACAGTGCAGGACccaatttacttttttgttcttATATTTACAATCTTGCCTAGTTTGTATTTGCTTCATAGTGTTAAAAAAgattatttactgttttagAATAATGCTAAACATGATTCTATTATATCTGTATCTCCTTTGATAGGATTGGTATTGTAGTACTGGATATCTGTTCCAAACAAATAATCTTTCATCAATGTCCTAGCATTTGGgctgaaaagcaattaaaatattgattggATTTATACGTGTAAAAAAGATTTGTGGAAGCAAATAAAGACAATGGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158992 lncRNA upstream 148800 6213182 ~ 6213407 (+) True G126805
TU158965 lncRNA upstream 156174 6203698 ~ 6206033 (+) True G126782
TU158964 lncRNA upstream 160602 6200909 ~ 6201605 (+) True G126781
TU158870 lncRNA upstream 562572 5719268 ~ 5799635 (+) True G126714
TU158853 lncRNA upstream 790275 5569970 ~ 5571932 (+) True G126697
TU159107 lncRNA downstream 15704 6380974 ~ 6381195 (+) True G126886
TU159147 lncRNA downstream 308342 6673612 ~ 6674227 (+) True G126919
TU159121 lncRNA downstream 320159 6685429 ~ 6748609 (+) True G126898
TU159218 lncRNA downstream 866083 7231353 ~ 7254142 (+) True G126982
TU159276 lncRNA downstream 1244347 7609617 ~ 7613856 (+) True G127033
AMCG00000879 mRNA upstream 1182 6357094 ~ 6361025 (+) True AMCG00000879
AMCG00000877 mRNA upstream 22173 6334748 ~ 6340034 (+) True AMCG00000877
AMCG00000878 mRNA upstream 30107 6305017 ~ 6332100 (+) True AMCG00000878
AMCG00000870 mRNA upstream 109437 6232529 ~ 6252770 (+) True AMCG00000870
AMCG00000871 mRNA upstream 140802 6218380 ~ 6221405 (+) True AMCG00000871
AMCG00000881 mRNA downstream 53612 6418882 ~ 6426938 (+) True AMCG00000881
AMCG00000882 mRNA downstream 166731 6532001 ~ 6541611 (+) True AMCG00000882
AMCG00000884 mRNA downstream 368537 6733807 ~ 6743970 (+) True AMCG00000884
AMCG00000890 mRNA downstream 923013 7288283 ~ 7307656 (+) True AMCG00000890
AMCG00000891 mRNA downstream 978600 7343870 ~ 7346591 (+) True AMCG00000891
TU157662 other upstream 4665960 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 4761568 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 6020436 339640 ~ 341771 (+) False G125561
TU159397 other downstream 2251929 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 3782587 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 5634394 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 8804641 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 9043842 15409112 ~ 15420880 (+) False G128823

Expression Profile