RNA id: AMCG00000877


Basic Information

Item Value
RNA id AMCG00000877
length 2251
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00000877
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6334748 ~ 6340034 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTTCCGGAATGAGATTGAAGGGTCTAGTCATCACTGATGCGATCAAAGAGCCGCAGCCGTGAACAGGGGGACCGACGTTACTTTTGTCCAAAATGCTCTGGTTTGAGGGCACCATCCCTGCCGCCATCGCCTCCGCCAAGCAGCAGAACTGCATTTTTGTCGTCGTTATCACAGGAGATGAcgaacaatcaatacaaatggtTTCCAGCTGGGAGGATGAAAGGGTTGGTGAAGCAACAGCCAACTCTTTTGTAGCGATTAAGATTGATGCCAAGAGTGAAACCTGTGTGCAGTTTTCACAAATCTACCCGGTCGTGTGCGTCCCATCCAGTTTCTTTATCGGAGACAACGGGATTCCTCTGGAGGTCATCGCTGGGAGCGTCCCCGCTGTGGAGTTAGTGAAGCGAATTGAAAAAGTTAAGCAGATGCACACACAGAAGTCGACAGGCCCTTATGGAAATGAGGCGGCCGGCGTGTCCGTCTCAGAATCGGCAACCCCGCATTCACTGACCCCACAAAAGAGCAAGCCACAGCCGAGCCCAGCTTCAGAAACGGCTCGAGCGAACGAAAATACCACGGCACCGGCTGCATCCAAAGAATCCCTGTCCAGACCTACAGAGGAAGGCCCCGGCTCCGGTCAGGTGACCCCGGCAGAGGACATGAGCATCTCGCCTGATGAAGGATCGGCCAGTTCCCAGCCTGACGACAACATCAATCTGCGGGTCGAGAGACTAACGAAGAAACTTGAAGAAAGAAGGGAGCAGAAAAAGAAAGGCGAAGAGGAGAATGAACTAAAGAAAGAAGTCGAACGCAGGAAACTGGGGAAGGAAATGCTGGACTTCAAGAAGAAGCGCGAGGGAGACAATACCAAGCGCATGCTGGAGGAGAGGAACCGGGAGAAGGCCGAAGAGAAGGCGGCGAGGGACCGCGTCAAGCAGCAGATCGCCCTGGACCGTGCGGATAGAGCGGCCCGCTACGCCAAGACGAAGGAGGAGATGGATGCCGTGAAGGCCGCTGCCCTCCAGGCCAGACAAGCAGAGCTGGACGCCCGGAGAGAGGCCTCTCAGAGGGAGAGGAGtgccACAGCAAGAATACAGTTTCGGCTGCCAGATGGTTCTTCCTTTACCAATCATTTTCCATCTGAAGCCAGGCTAGAGGAAGCCAGGCTATTTGCTGTACAGGAGGTTGGCAATAGATATGGCAATTTTTCACTGGCTACCATGTTCCCAAGACGAGAGTTCACCGGAGAAGATTTTGACAGAACCCTCCTTGAGCTTGAGTTAGCCCCAAGTGCCTCTGTAGTGCTGCTGCCGCAGACGGGGAGGCCAACTAACACAGTGGTTCAGTCTTCAGGAGGGGGGATCTGGTCCATCCTGGGGACGATCTTCTATCCTCTCCTCGCGTTCTGGAGGTTTATTAGCAGCTTCCTGACCTCAAGCCCTCCTGCCCCCAGTTCTTCCACAAGTCAGGGGGCGCAGTCTCAACGCCCACACCCCTCAGCCTCCACAGCAGAGCCAAAGAGAGAAACTATTCGGAAGCGAGTGCTGGAAAAACGTCCAGAGGACTTTAAAAAAGACGGCAAAATCTACAGGTTAAGGACTCAAGGAGACAGCGAGGATGACAATAACACTTGGAATGGAAACTCGACCCAGCAGATGTAGCCCACTGACCACTACTAATGTGCAATAACTTTTTTTACATCGGGTTTgagtaaatgtaattatattgatGAATCTGCTGATAGaaggcgttttttttttttttttttttctgtacaggCCTGGAATTGTATTTCCCCACTTCCTTTGCATGGGTAAATATAATCAAGTGACTCCTGACTGGCTTGAACAGTACTTCCTTTCTTCTTGTTTTGATGCTGATTGCCTAATTGTTCCTCATTAGCATATGATGAAAGACACTGAGATGGTTGCTTGCGTATGAGGAAACATggatgtgtgcgtgtgtttattaaaattgcCATGTGAGACATTGGCACAGAGTTACTATATCTATCATGTTCCTAGACCTGAGACAACATACGTTTTACTTACCAATTACCTAATGAAGAAAACCAGGTTGATTGACGCAATGTGAAGGGATgacatataatgttttatatataggtTGTGTCCCCTCATACTTGTATAATCTGCCATCgcagcagatttgtttttgttttcttcaagttACAGTTGATTTTACTTTCCAGCTCTCATTTAACAATaggaataaaaatgtttttcaacaaa

Function

GO: NA

KEGG:

id description
K24348 UBXN1_4; UBX domain-containing protein 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158992 lncRNA upstream 121341 6213182 ~ 6213407 (+) True G126805
TU158965 lncRNA upstream 128715 6203698 ~ 6206033 (+) True G126782
TU158964 lncRNA upstream 133143 6200909 ~ 6201605 (+) True G126781
TU158870 lncRNA upstream 535113 5719268 ~ 5799635 (+) True G126714
TU158853 lncRNA upstream 762816 5569970 ~ 5571932 (+) True G126697
TU159107 lncRNA downstream 40940 6380974 ~ 6381195 (+) True G126886
TU159147 lncRNA downstream 333578 6673612 ~ 6674227 (+) True G126919
TU159121 lncRNA downstream 345395 6685429 ~ 6748609 (+) True G126898
TU159218 lncRNA downstream 891319 7231353 ~ 7254142 (+) True G126982
TU159276 lncRNA downstream 1269583 7609617 ~ 7613856 (+) True G127033
AMCG00000878 mRNA upstream 2648 6305017 ~ 6332100 (+) True AMCG00000878
AMCG00000870 mRNA upstream 81978 6232529 ~ 6252770 (+) True AMCG00000870
AMCG00000871 mRNA upstream 113343 6218380 ~ 6221405 (+) True AMCG00000871
AMCG00000869 mRNA upstream 136225 6194058 ~ 6198523 (+) True AMCG00000869
AMCG00000872 mRNA upstream 140957 6189970 ~ 6193791 (+) True AMCG00000872
AMCG00000879 mRNA downstream 17060 6357094 ~ 6361025 (+) True AMCG00000879
AMCG00000876 mRNA downstream 22173 6362207 ~ 6365270 (+) True AMCG00000876
AMCG00000881 mRNA downstream 78848 6418882 ~ 6426938 (+) True AMCG00000881
AMCG00000882 mRNA downstream 191967 6532001 ~ 6541611 (+) True AMCG00000882
AMCG00000884 mRNA downstream 393773 6733807 ~ 6743970 (+) True AMCG00000884
TU157662 other upstream 4638501 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 4734109 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 5992977 339640 ~ 341771 (+) False G125561
TU159397 other downstream 2277165 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 3807823 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 5659630 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 8829877 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 9069078 15409112 ~ 15420880 (+) False G128823

Expression Profile