RNA id: AMCG00000878


Basic Information

Item Value
RNA id AMCG00000878
length 4541
RNA type mRNA
GC content 0.48
exon number 24
gene id AMCG00000878
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6305017 ~ 6332100 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caGGTTTTTGAGGGGCATGACCGGCTTGTTCGAGGGCAGCTCTGTTCAGACCTGGACTCAGTGCTGCTGACAGGGACATGGGACTCTTCCTCGGGGCTTCCAGCAGGCTCAATACAACTGACAACGTGGTTGACAGCATTGAAAGGGACCCGGGGTTTCTCCTTTCCACTAGCGGGACACCACAGGTCTATCACTGGAAAACGCATTGGGTCCCACGCTTTTGGTAGAAGCTCCAAGTAACCTTCTCTAATGAGGATGTCTGATACTGTTACTGTAAAGGAAACGACTGAAACAATGAGAGGTTCAGAGGTAGAGGAACATGACTCAACACTAGGAGACAGCCTGACAAAATCAGAAATCCAGGAACAAATCGAGCCGGAGAAAGATGAAAGCTATTGTGACAACAAAAACGAATCCCAGGATAAAATTCAGATCCAGTTCACCCAGTCATTTGATAAGGAAGATCTGCCCATTAAAGATGAAGATGAGCCAGAGAAAAGCACAGACAAGCTGGACAGATCAGATAAGATGCCGAGGAAAATGTTGTCTAGAGaCTCCAGTCAGGAATACACAGACTCCACTGGCATTGACCTTCATGAATTTTTagtaaatactttaaaaaacaaccccAGGGATAGAATGATGCTTCTGAAGCTGGAGCAGGAAATCCTTGATTTTATCAGTAATAATgaAACTCAGCGAAGAAAATTCCCTCCCATGACATCCTACCATCGAATGTTGTTACATAGAGTAGCCGCCTACTTTGGATTAGATCACAATGTTGACCAAACTGGAAAATCTGTCATTATTAACAAAACTAGCAGTACAAGAATACCTGATCAGAAATTTTCAGAACATATTAAAGATGACAAAAATGATGATTTTCAGAAAAGGTACATTCTGAAAAGGGACAACTCAAGCATGGACAAGGATGACAACACGatgCGAATCCGTTTGAAAGATGACCGGAGAAGCAAATCCATAGAAGAACGGGAAGAGGAGTACCAGCGAGCGCGAGAGAGGATTTTTGCACAAGATgCTCTTTGTGCCCAAGAAAATTTTCCACCCGATAAAAGAATCCAGGATGATGAAGCTTCAAATAGTACACAACAAAGACGACAGATATTTAGAGTGAATAAGGACGTGTCCGGTCGCTCGGCAAACAGTCGACAGAGCAGTTCAGAGAACGAGCCCAAGTATTCGGACCCCCGGCCCTGGAGCAGTACCGACTCGGACAGCTCCAACCGCAACCTTAAGCCGGCTATGACCAAAGCCAGCAGCTTCAGCGGCATTCCGGTGCTGATTAGGGGAGACAGCTCGGGGAGCAGCAAGAGCACGGGCAGGCTCTCGAAGACAGGCAAGTCAGGCTGTTCTGAGTCTTCTAGTAGTGTAGGGTCCTCCACGGGTTCGCTTTCTCGCACCCAGCAACCACTTCCTGTTGCAGCTTTAAGCCAGCCCACCCGCGGTGCGCCTCCCGTCTATCCAACTGTCAGCACTAGTAGTTCTCTGTCCTTTGATGGTGGCATGAGTGGGCAAGTGGCGTCTACAACTAATGCTAGCTACTATTTGCTTCCCTTGGAAGCCACAGGGATACCACCTGGCAGTATTCTGATCAACCCTCACACAGGTCAGCCATTTGTGAACCCTGATGGCAGTACTGTTGTGTACAATCCCACCATGGTCCAGCAGCCTATAAGGACCTCAACGCagccgccccccccacctccgCCCCCCCCACCAGTACCACAGCCGCATCATACTGCCAACCACGTCCTCTCACAGCCTATGCGGCCCCTGCAGCCTTCTTCGCAGCCTGTGCAGTACTCTACGATCTCTTACCAACCTCAGCTCCTGACAGTCTCCCCTAGCCAGCAATACACTGTGCAAGAAAACCTGGGTGTCCAGTTCAGCCATATGAACCTCGCCAGACAGCCTTCCAGTGAAGGTCCCGATGCTCACACTGCCATGTACCCCTCATCGGTCGTCCTTCAGCCACCCCAGCAGACTGGCTACATCGTAGCCCCCCCGGGGCAGCCGGTTCCTGCCCCCACCTACTCCACCTCAGCTCCGCCTGTCAGTCAGCAGGTTATTCAGCAGCAAGCATACATACAGCAACCCATGCAGCAGATGGCCACCTGTTACTGTGCTCCCAGCCAGTACCCACACTCCAGCCAGCAGTACCGGCCAGTCACCCCAGTGCACTACAACCCTGCCCAGAGCCAGCCTCTGACGCAGCCCCCTCAGCAGTCAGGTTACCAGACTGTGATGCCAAACCAACAGCAGACCTATCAAAACATGGTAGGAGTTCAACAGCCACAGAATCAAAGTCTAGTAAGCAGCCAGCATAGCAATATGGGAAACCAGATGCAAGGCATGATGGTCCAATACCCTTCCATGCAATCCTATCAGgtATCAATGCCTCAAGGATCCCAGGGCATACCCCAGCAGACCTATCAGCAGCCAATCATAATACCCAATCAGTCAAACCAAGGACCCATACCGGCATCAGGAGTGCAAGTCTATTACAGTGTTATACCACCAAATCAGCAGAATAATATAAGCTCCTCAGTGGGGTTTCTGCCCCCCCCAGGAACGGAGCAGATGCAGTTCCCCCGGACGTCCCCCCCCTGTGGCTCCCAGCAGCACCCCGGCCAACAGTGTGCAGCTGTGGCACCCCCCCATGGCAGCAGCATGGTCCTGATGCAGCTGACATTACCCACAAACCACCAGCCCAGGGCCCACTCACCGACCCAGTGGAAACACCACAAATACTACAGCCTTGACCACCAGAGGGGCCAGAAatccactgaactctcaaatttAGACACTTCACAGAGCAGTCCCCAGCTGGGCAGTCCCGCCCGCTCCCCTGCACAGTCCCCCGCCCCCGCACAGCTCACCAACATGAAGAACATCCGTCCTGGACTCACTTCCATCTCTATCATGCCCCAGTTCTCAAGACCGTTAGTCACCGGCCAAGGTGATGCCCGTTATCCCCTCCTGGGCCAGCCACTACAGTACAACCCTCAGATCCGTCCTCCGCTGCTCCATGGGCCGCACATCATCCCCAACCACCAGGGTCCCCCAGGAATTAGACATGGAGGCAGAGGGAAGAAGCCAACACGGAAAGCACTGTCCACAGATCTTAGTGTAGGTGAACCAGTAATTGGGAGAGTCTTAGAAGTAACCGATTTGCCGGAAGGAATAAGCCGCACAGAAGCCGAAAAGCTGTTTGGTGAACTTTGTAAAGTTGGGGCCATAATTAAATGGATTCCAGATCATCAGCCGCAACAAATGCACTGCGGGAGCGGGGACAGCAACGCGCACTTGGACCACTCGAAGCCCCCTTGTGACTTGGCCTCCACGTACACAATCCTAGCGATGTTTCCTTCAAAACATGCTGCTCAGAAcgcattaataaaacacaataactCCTTAAACAAGTTCAAACTGAGAACTAGCAAGAGGCACTACGAATTTCACAACCTGGAGAGAGCTAGTTCTCAGTAGCAGGCACTGCAGCGTCGGACTGGTAGCCTCGGTTACCTCCAGTTGCATTTACCCCTCTTCCTATTTCGCACTCAGTCGGCTTGATTATAATGGGTTTTCACTTGAGTTGTAGAGACTTTGGGAATGTGTTGTCTTTGTAATGTTCTAGcgatttgggaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaaagaaagttcCAAATatcacatttctttttcagGATTGACTGGAGCATATCAAAGAGCGGCAtgtacaccccccccaccccaccacagttttgttttagttttagttttatcttTGTGAATTCGTGTCCGATCCAAAGCTCTGTTGTAcagctgctttattttgaaattacaggTTTATCGCCTcgttcttttttccccccagaccatttaaagaagaaaaaacaaatccacaaaagAGGATTTCACAGGTTGTCTCTGTTTAGTGTGGTCACGACACAAAAGAGATATCTTGAGCTAGagaatcgttttgtttttgtgccttCCAGACTTCTATACTGTTCATGTGATAGAAAACCAGATGCCTAGATGTAAAGAACAACTTCTACACAACTAAACCATTAAAGGACCCATGCATTTGTACATAAGTTAAATATTAGCGATTCTCTGAAGTGTGAATGTTAAACTGGCAACAGGCACAAATGAGAACTGAATCCTTGGTTCAAAATACCTggttttaacttaatttaaaaaagtaatatctCCCGAATGGTGTACTTTTAACGTTATGCTCACCGCTTTCAAATGTTCAGTACCACtttctcccccacccctccctgtGTATCTCCAACTGACTCCAACATTTCattcaaaattacttttttaattacgTTCCATGACAAAAGGGGCACTGGAAATCAGTTTGCACATTGATACAACTGAAAcctatttctttttattttactttcctcCAAAACGTGTGGATTATGAAAGGCTGTACAATGTTTGCTGGCGcaagtcatttttatttcagtttgaaaccaataaatgtttacaaaataccA

Function

GO:

id name namespace
GO:0005871 kinesin complex cellular_component
GO:0005875 microtubule associated complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158992 lncRNA upstream 91610 6213182 ~ 6213407 (+) True G126805
TU158965 lncRNA upstream 98984 6203698 ~ 6206033 (+) True G126782
TU158964 lncRNA upstream 103412 6200909 ~ 6201605 (+) True G126781
TU158870 lncRNA upstream 505382 5719268 ~ 5799635 (+) True G126714
TU158853 lncRNA upstream 733085 5569970 ~ 5571932 (+) True G126697
TU159107 lncRNA downstream 48874 6380974 ~ 6381195 (+) True G126886
TU159147 lncRNA downstream 341512 6673612 ~ 6674227 (+) True G126919
TU159121 lncRNA downstream 353329 6685429 ~ 6748609 (+) True G126898
TU159218 lncRNA downstream 899253 7231353 ~ 7254142 (+) True G126982
TU159276 lncRNA downstream 1277517 7609617 ~ 7613856 (+) True G127033
AMCG00000870 mRNA upstream 52247 6232529 ~ 6252770 (+) True AMCG00000870
AMCG00000871 mRNA upstream 83612 6218380 ~ 6221405 (+) True AMCG00000871
AMCG00000869 mRNA upstream 106494 6194058 ~ 6198523 (+) True AMCG00000869
AMCG00000872 mRNA upstream 111226 6189970 ~ 6193791 (+) True AMCG00000872
AMCG00000867 mRNA upstream 115955 6181905 ~ 6189062 (+) True AMCG00000867
AMCG00000877 mRNA downstream 2648 6334748 ~ 6340034 (+) True AMCG00000877
AMCG00000879 mRNA downstream 24994 6357094 ~ 6361025 (+) True AMCG00000879
AMCG00000876 mRNA downstream 30107 6362207 ~ 6365270 (+) True AMCG00000876
AMCG00000881 mRNA downstream 86782 6418882 ~ 6426938 (+) True AMCG00000881
AMCG00000882 mRNA downstream 199901 6532001 ~ 6541611 (+) True AMCG00000882
TU157662 other upstream 4608770 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 4704378 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 5963246 339640 ~ 341771 (+) False G125561
TU159397 other downstream 2285099 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 3815757 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 5667564 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 8837811 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 9077012 15409112 ~ 15420880 (+) False G128823

Expression Profile