RNA id: AMCG00000879



Basic Information


Item Value
RNA id AMCG00000879
length 1144
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00000879
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6357094 ~ 6361025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cccgcgcagaactgcggaccaAAACAACACGCAAAGCCGCTGTCAGACGCGGAAGCGCTCACAGTTCAGACCCCAGCCCGCTGCTGCGAGGAAAGCTGCTTCAGgtaaaaaggtaaaaatggGTTCAAACGAAGATACGGCTTCTCCACTTTTAAATGGAAACTCCCTTCAAAGTGAAACCTTGTCCCCTGAGGAGCAGCAGGAACTCAAAGCAGCTTTGGAAGAACTGGAAGAGTGGAAGCTAAAGCACGAAAAGGCAGACACTGAAAAGTCCAGGCTGATTTTGGAAAAATTGgatacagaagaaaataagaaaagagcCGAGAGGGAGGCATTGGATCTCCTCAAACAGCAGGATCTTAATACCCACGcgtttaataacaaaaaaaagacaatggaGGAAGGGCTTCTGGACATTCAGAAAAAGAATGATGCGCTGAAACAAAAACTGAAGGACTATGAAGAACAGCtacaactgaagaaaaatgaaCAAGCATCTCTCCAGCAACAGCATAAGATAATCGCAGAAATCCCAGAAAAGAAAGTGAAGTTCACCAAAACCAGAAACTCCGAAGACTCCGAAGACTCTGAAGACTCTGTCAACATTGAAGGCCAGTTCACCATTATACAGAGACCCTCGATCACTCTGAAGGGAGGCCAGGCACTCATCACCTTTGAGGAAGAGAAAGTGGCACAAAGAATCTTAAAAATACCCAAGTGCACAGTGACGTTTGACAACGCCAAGATGGACGTGAAGCCGTTCAATGTGATGATGGATCCCTCTGTCAAATTTGAGGTGCACTTCAGTGTGTCAAAGAAGACCGTTAAGTTTTCGAACGCTCCTCCCGTTTTATCAGATGAGAGGATGAGAGACAGGCTGGAGATGAGCTTCTCAAAGCCCAGTCTGGGAGGTGGGGAGGTGGAGTCTGTGGAATACAACAAGGAGTCCGGGACAGGCCTCGTGACGTTTCTTAACACTGGAGGCATTGAAGATGCCCTTGATGAGGAGGACCTGCAGGACAATTTGGAGATCCATTTTCAGAAACCCAGCAACTACGGGGGGGAGGTGGAGAGCATCAGATACATTTCCAAAACCACCGGAAGTGCCGAGGCCTACTTTAATGAAGACACTGTTGAAGCGGAA

Function


GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU158992 lncRNA upstream 143687 6213182 ~ 6213407 (+) True G126805
TU158965 lncRNA upstream 151061 6203698 ~ 6206033 (+) True G126782
TU158964 lncRNA upstream 155489 6200909 ~ 6201605 (+) True G126781
TU158870 lncRNA upstream 557459 5719268 ~ 5799635 (+) True G126714
TU158853 lncRNA upstream 785162 5569970 ~ 5571932 (+) True G126697
TU159107 lncRNA downstream 19949 6380974 ~ 6381195 (+) True G126886
TU159147 lncRNA downstream 312587 6673612 ~ 6674227 (+) True G126919
TU159121 lncRNA downstream 324404 6685429 ~ 6748609 (+) True G126898
TU159218 lncRNA downstream 870328 7231353 ~ 7254142 (+) True G126982
TU159276 lncRNA downstream 1248592 7609617 ~ 7613856 (+) True G127033
AMCG00000877 mRNA upstream 17060 6334748 ~ 6340034 (+) True AMCG00000877
AMCG00000878 mRNA upstream 24994 6305017 ~ 6332100 (+) True AMCG00000878
AMCG00000870 mRNA upstream 104324 6232529 ~ 6252770 (+) True AMCG00000870
AMCG00000871 mRNA upstream 135689 6218380 ~ 6221405 (+) True AMCG00000871
AMCG00000869 mRNA upstream 158571 6194058 ~ 6198523 (+) True AMCG00000869
AMCG00000876 mRNA downstream 1182 6362207 ~ 6365270 (+) True AMCG00000876
AMCG00000881 mRNA downstream 57857 6418882 ~ 6426938 (+) True AMCG00000881
AMCG00000882 mRNA downstream 170976 6532001 ~ 6541611 (+) True AMCG00000882
AMCG00000884 mRNA downstream 372782 6733807 ~ 6743970 (+) True AMCG00000884
AMCG00000890 mRNA downstream 927258 7288283 ~ 7307656 (+) True AMCG00000890
TU157662 other upstream 4660847 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 4756455 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 6015323 339640 ~ 341771 (+) False G125561
TU159397 other downstream 2256174 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 3786832 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 5638639 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 8808886 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 9048087 15409112 ~ 15420880 (+) False G128823

Expression Profile