RNA id: AMCG00000880


Basic Information

Item Value
RNA id AMCG00000880
length 6753
RNA type mRNA
GC content 0.45
exon number 24
gene id AMCG00000880
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6340352 ~ 6356387 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCATGTACTTGGTGGTGTTAGAAGGTCTCCCGGATGACCTGGATCGGGTCAAGCCTAGACTGgatttatattttcagaataaGAGAAGATCGGGAGGAGAAGTTTTGGAAATCCGACATCATCCCGATGACAGAAGAAAAGCTGTGCTGGTGTATCTGGACGAAGCAGaagcAGAAGACTCGTGGAGGCACCAGGATGATGGCCCACCGCGAGATGCATTGCTCTTGCTAAGCAGTGATTGTCCCGTTAATAAagagctcctccagctccactTTGAGCAATACGCTGAAGATGTCGAAATTAATAGCCACCAGACAAACCAGTGGATACTGAAATGTGACAACCAGACAGATCTAAAAACAGTCCTTACCAAGGAGAAGCATGATTTAAATGGCACCACCATCACTGTGAAGTTATATGATGAGAAAGCTGAAGAACAGAAGTTCGACCCCCGCAGGGTCATCTTGAGTGGCTTCAGTGGGGACACCAAGTGGAGCTTCATTTCCCTTTATGTCAAGAGCTGCAGCAAGGGAACCGAGCATGTGTGGGAGATTCTGGAGGACGGGAGAATCGCAGTTACCTTCATGCAGGATTTAATTTCATGTATTCTTCTTTTAGATATAAAATCGTTTCTGAAGAAATGCTTCAATAAACCACTGCAGAACAGTTACATCACAGTGTCACGCCTGGAACGCACCGACTCTGTCCTGGTTGGAGGACAAACTAGTAAGATCTCCGAGGAAGTCCTGAAGCTCTATTTTTCCAACTTAAAAAGAAGCAAAGGAGGGCAAATAAAATCACTGACCAGGTACACAGAAGCAGAAGGTGTCATTATTGCCTTCGAAGACTTTCATGCGGCGTACCGAGTCTCTGAGCAACAGCATGAAGTTTGTGGAGTCAAGTTGACGGCTCACCTATACTATGCGAGTTTGCAAAAAGCTTTGACTGGCGAATTGTGCACACCACCGGGCCTGCCCAGGAAAATATCTATCCCTGTGGACCCGCTGCTTCTTGACTACAttaagtgcacaaaacaatatcAAGAAGCGTTTGAAGAAACTTTAAGTAAGGTTTATGCTAAAGTCTATTTTGAAGGATCTCCCAAGCCTCATCAAGTGTCACTGGAAGTCACAGTCGCCAGCAACTCTCTCTTGCTGTACCGTGTTGCTCCTGACTGGGAAAGCAATGTCAGGCAGATGGTTCGGTCCTTTCTTGACAAATATGGTGTAATCCAACTTGAATCAGAGATAGAAAtctgggaaaaaattaaaaccaagtGCCTGGAGATAATTTCCGTTGACTTACATGTGTCCTTTGACTTCTCCTCCAGCACAATAGTGCTGATTGGACAGCGAAACAAGGTTAAAAGCCTTCAAGCTACAATACAGGGCCTGATGACCGAAGCAAATATAGAGCTGGTGAATGAAAGGAACACCATAGAATGCAACATTAAAATGGACAGCAAAGAGGAGATGGATTTCTTGTGGAATTTGATCTTCCCCAAGCTTACAGATGTACTGCCTACAAAAGACGAGGCAGGCTTGGTCTTTCACCTTAAGGGGCACAGAGACAAAGTGAGCCAAGCAGAATCATTAATCAGGGAGACCCAGCAGAAACTTGTAACTCGGACTCCACGTTTATCAGCTGGTATAATGCAGTTTCTAAAGACAGTGGACATGAAGAAGTTTGAGCGGGACCACTTTCTCCAAAATGGCATTTCAGCTACAATCTTAAACCATGACTCCATGCAGATCCTTGCTGAAGAAAAGGACATAAAAGAAGCTGAAGATAAACTAAGGGAGTCTGTGTCTGAGGTTATAATCACCCTGAATGCCGATCAAGCTGAAGTTGCCAAAGGTGAAAAATGGAAGCAGTTTTTCAGTGAGCTAAAAGAAGAAGTAGATTCCAACAGTAAGGTTCCCAGCCTCAGCATTGGACAAACCGATACCCAAATAACAATTTGTGGGTTTTCGGATGTGGTGGCTGATGTTGCAAGAAAGCTCAAAGGCTATTTAGCTAACAAAATGCCTGCAACTGAAGTTATTCTGCTCAAAGCAGTGCGTGAGTTGGAATTTGTGGACAGTTGCATGAAGCTCTCTGAAGATGCTGAAATCAAGGCCCTGGGTGCCACAATCCTGCCAGTGAGAATTCCAGCCTCTCCTTGCTTAAAAGTCACCGCCGCCACTGAGAACATTAAGAATGCAGTGGCGgcagtgaaaaagaaaactgattctATTGTTTCAGAAAAGGTCACCTGGAGCAAAGCTGGAGAATCCAAAGTGCTCGAAAAACATCAAGATTCCTTCAAGGCTAGAGCTGCAGGGTTTGGGTGTAAACTGTGGTTTGCTGTGGAACAAGCCAGGAAAATCGCTACGACCACATCCTACGATCATAAAATTGGCGACCTGTTAAATTTGTCCATCGTCCACGGGGATGTTACAAAGCATGCTGCAGATGCCATGGTTTGTCCATTAAATGGTGACCTAGCCTTCGATAACCCAATCTCTCAACAGTTTCTCAAAATTGGAGGGGCTCAGATAAAAGTTCGTTGTGATAGTCGTCTGAAAGAACAGCAACCCATTGTAGCTGGAGATGTGATACTATCCAGCCCGGGAAATCTCGCCTGCACGTGGCTGATTTTTGCAGTGACTCCCATATGGGGGAAATGTAATTCTAGGGAAAAGACTTACTTATACAGTGCAGTTCTTCAGTGTCTCTGCTTAGCTGAAGTCAAGCAATGTAGCTCCATTGCCCTGCCAGTCCTGGGGCAAGGCAACTTTGGGATTCCCACGCTTGACAGTGCCAGCGCCATGCTGCAGGCAGTGCAGGATTTCTGCAGCAGTAATCGGAAAACCACCCTGCACCTGAAAAACATCTTTGTGGTTGAGTCTGACATCATGATATTTGAAGAGCTTCAAAACGTCATCAAAGGAATGGGAAAAATAAGTGCAGGAAAACTGGAAAGTGGAGCACCACGATACATCCCACATCTTCCACTTAAACCATTATCACTTCTGCTTAAAGCAGCAGCAACGGTCAGTGTCCATGGGATCAGAGTTACTCTGAAAAAGGGGGATATTACCACAGAGGCCGTGGATGTGATTGTGAACTCTACTAACAGCAGTCTGAATCTGGACACTGgTGTCTCTGCTGCCATTCTGAAAGCTGCAGGGAAATCTGTTGTTGATGAATGCACCAAACTGGGTAATTGTACACAAATAGGTACTCAACCAGCAGATGGGGTGGTGTCCACTGGAGGGGGGAATCTCCAGTGTAAACACATTATCCAAATGGTGGGGCCCATCAACGTGGCAGGCATCACGCTATCTGTGGAGAAGGTCATGAATGAGTGCCAAAATAAGCAAGCCACCTCTGTAGCACTCCCAGCTATAGGCACAGGAAGAGGTGGTATTGCACACAGACAATCCATTGAAGCTGTATTGAAGGGACTTGAAAACTATTTCTCAAAGACCAGCCCAACAACTATCACATCTATATACATCATTGCTTTTGAGCAGAAGGTTTATGATGCATTCCAGGCCTACTTTGCTGAAATAAATCTGCAGTCCGGTGGAAATGTGCAGGTTGCCTCACAATCTCATCTAAGAACAGCTCCTACAAACCTTTCTTTGAGTCAAGGGCTCCCTAATGTGCAGGCTATGCTGTCTCCATTTCTTGTGAAAATTTGCAATGTTACAGTAGAAGTTAAGAAAGGCGATATCACTAAAGAAACCGTTCGTGGGATTGTCAATTCAACAAACCATGGCTTGAACTTAAAAGGAGgGGTTTCAGGAGCTATATTTAAAGCTGCTGGGAGTTCAGTAGAAGATGAGTGTAAAGCACATGGTAAGCAGGCTGATGACGGGGTTGTAGTGACCAGCGGAGGAGAGCTGTACTGTGATTTCATCATTCACATGATTGGGCCAAAATCCCTGCAGGCCGTGGAGGCGCAAGTGCAGAAGGTTCTTCAGGAGTGTGAGAAGAACCAGATCACCACCGTCTCCTTCCCTGCTGTGGGCACAGGTGGTGGGGGGCTGAAAGCCACTGAAGTGATGGCATGGATGCTCCAAGGGTTTAAGAATCATTTATCTCAACAAAGCCAATCTGTCATCAAGTTCATATATGTCATCGTTGCGCAAGATAACATCCTGGATGCCTTTAGGGATGGCCTGAAGAAATGGACAATTAAAACACTAGTTGGTTCTGTGGACGACAGATGTAGTGACAGCTGGGAGTCAGCGTCTGAAGAAGACGATTCATCCCAGCCGCCGGACAGCATTGAAATATTAATCGGGCGGATCCGAGTAAAGGCAGTGTGTGGTGACATCaccaaagaaaatacagatgcCATCGTAAGCAGCACCAACACAACTCTCAATTTAAACTCAGGAGTTTCCGCAGCGATTCTTAAGGCAGCGGGACAATCGGTTGTGGATGAATGTACAGCTCTCGGGACCCAGGCAAGCAACGGCTTCGCAATAACGTCCCCTGGAAATCTGCAAGTAAAGCACATTGTGCACATGGTGGGGCAAACCACAGAAAAGGCCATTACGGAGTCTATGTGTAAAGTGCTAACTGCTTGTGAAGAGAAGAAGATGCAGTCCGTGTCATTCCCAGCACTCGGAACAGgagCAGGAAATTTAGGTGCAACTCAGGTAGCCAGTGCCATGATTAACGCAATAGGTCGTTTTGTAATCGACCACGTCAAACCTTCGGTCACCTTCATCCGCATCGTAATATTCCAGAAGAAACTGATGCTGGATTTTGAAGACATCATGAAGAGGTTCAAAGTAGTCACTCCTAAATCCACACGGCAAGcaaaaacaaagtCACAACCAATCACTCCGAACAGCAGCCTGAGAAATCTCACAGCGTTGGTGACACATCCTGTCATGACAGTGGAGGTGTATGGGACCGCTAAGGAAAGTATTACCCAGGTGAAGAAATGCATCGAGGACTTGGTCAGAGGAGAGTGCACCAGCCAGGATGTCGATGCCAAATACGCTGACCATTTCCTGGAagtggaaaaacaggagataGCTGGCCTGACCCAGAAGCACCAAGTCAGAATCGAAGTAGGGCCCAGTAAGATGACCGTGACGGGGAAAAAAGACGACGTTCTGACCGCGGTCCTGGAGATCAATGGGTTCATGCAGAAGGCcaaggacagagagagcaggaaagAGGAGCAAGAGAGAATGAAGAACATTGTCCAGTGGGAGGCTGTGAAATCTGAGAAACCAAAACCTCTCGCCTCCGATATAAACTACGAGCTGGAACTAGCCTAtcagaaaaaggagaaaaccTATGTGTATACATGGCATGGCGAGTCCTTCACCATAGATTTTGAGAAAATGCAGCAAACGGGCAGTAAAGGAAGAGTCATGAAAATTAAAAGGACCCCTCTGATCAATTCCGAGACAGcccTCATAGAGCTACCTGTGGAATGGACAAATATGAAGGGGCAGAACATGGAAGTTATTGGGCTTTTATCAACCTCTGAGGAATTCCAGAAGATCTCAAAGGAGTTTATCAAATCCTGTCAAAAAGGCAGTTGCAATGTTGAAGTGGTACAgATTGAGAGAATACAGAACCGGGAGCAGTGGGAGAGATATGCAATAAAAAGACAGGCCTTGGACAGGAAGTATCCCAAGCAGAAGAACGAGCAGCTCCTCTATCACGGGACAACAAATGACATCTGccaaaaaatcaacaaaaccgGCTTCAACAGGAGCTTCTGCGGCAGAAACGctACCAAATTTGGCCAAGGAACATACTTTGCCAAAGAGGCCCATTACTCTTGCCACGATTCCTATTCCAATCCCGATGCCGTGGgccacaaatacatttacagagcCAGAGTGCTCACAGGAAAACTCTGCAGAGGAGTCGAAGGCATGAAGGAGCCGACGCCAGTTAATCCCAACGATCCTCACTCGGACCTGTGCGACTGTGCCGTTGACAGTTTATCAAAACCTTTCGTACATGTCATCTTCTCCGACTTTGGAGCATACCCAGAGTACCTAATCACTTTTAAAACAGTATGAAAAAGAAGTATTTTTGTAAGTGCCTTTTCAGCTCCATTTTTATTACCGCTACTATACAATGTCTTCCGCTCCGACCTAACACTTCACTTCTGCAGCCCGCCCAACAGGTCTCttgcaataataaaatgtgtggaCTAACAAATACTGCAAACCACACAGATTAATATTTCAGGAGATTTCCAAGTAGAAAccaaatcaaaaacacagatgcatggattatttattgatttatagcTTTTAACATTCATAGAAAAAGATTGATCATGTTTAAATAGAATGGTTATCTGGGAAAACATAAGGCCACTGAAatagctgtattttatttcggCTTCAGTGACATGAGTAGTGAAATGCCGACTCTGCCCTCACCCTGTCAGAAGAGGTCTAGGCTTCTCTGCTCCTACTTCCTTGTTCTGGCCTGTGACTTAAACACTGGTCACTGGAACTGTTAGGATTTACTTTTACCCATCTGCAAGTATAATTTTAGAGAATGCAGAGAAGTCTGTCTTCATCATTCAGCTCTTTGCTTAGTGGCCACCATAAAAGCACCACCTGTGccttaatttaatgaatattttCAATCTAAAATCAAGTTTACGATAACCTATATTTGCTGTGTATGTTATGTAGCATCAGCTTGAACAATGTTCTTTATTACTCGGGGAGATGTATTGCaataaaaagtttgaaaatgtgcattct

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159089 lncRNA downstream 4486 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 390458 5943386 ~ 5949894 (-) True G126767
TU158854 lncRNA downstream 768219 5569944 ~ 5572133 (-) True G126698
TU158803 lncRNA downstream 876300 5462567 ~ 5464052 (-) True G126665
TU158766 lncRNA downstream 967893 5372249 ~ 5372459 (-) True G126631
TU159108 lncRNA upstream 24576 6380963 ~ 6381248 (-) True G126887
TU159209 lncRNA upstream 763857 7120244 ~ 7125041 (-) True G126977
TU159291 lncRNA upstream 1273528 7629915 ~ 7645722 (-) False G127039
TU159409 lncRNA upstream 2282209 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 2407726 8764113 ~ 8764392 (-) True G127159
AMCG00000873 mRNA downstream 50773 6253900 ~ 6289579 (-) True AMCG00000873
AMCG00000874 mRNA downstream 128959 6198591 ~ 6211393 (-) True AMCG00000874
AMCG00000875 mRNA downstream 197775 6127419 ~ 6142577 (-) True AMCG00000875
AMCG00000866 mRNA downstream 329935 5985104 ~ 6010417 (-) True AMCG00000866
AMCG00000865 mRNA downstream 416646 5922771 ~ 5923706 (-) True AMCG00000865
AMCG00000883 mRNA upstream 194625 6551012 ~ 6556951 (-) True AMCG00000883
AMCG00000886 mRNA upstream 242465 6598852 ~ 6601477 (-) True AMCG00000886
AMCG00000887 mRNA upstream 267870 6624257 ~ 6662496 (-) True AMCG00000887
AMCG00000885 mRNA upstream 308915 6665302 ~ 6678106 (-) True AMCG00000885
AMCG00000888 mRNA upstream 333181 6689568 ~ 6715587 (-) True AMCG00000888
TU158856 other downstream 767325 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 1703836 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 2683791 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 3191100 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 3206535 3131714 ~ 3133817 (-) False G126096
TU159187 other upstream 355571 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 1273528 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 3062609 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 3918300 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 4341320 10697707 ~ 10700348 (-) False AMCG00000960

Expression Profile