RNA id: AMCG00000883


Basic Information

Item Value
RNA id AMCG00000883
length 1758
RNA type mRNA
GC content 0.35
exon number 3
gene id AMCG00000883
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6551012 ~ 6556951 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttaggtACCTATCAGTGGGGAAGGAGTTAGCCAATTAGAGAGCTGCATGTGTGAGGCCACGCCCAGCAATGGAACCCTGGCCTACAGTGGCCTGGGTCCTACTGCTGAGCATCATCACTGATTGGCTGAGAACTGTCCACTCACGTGACTTCACATTCAGAGACATCATCTACCTCCACCCTTCAAAAACAAGATACTgtttcacacaacacacaatggACTCCCGAGGGGAAAGCGTGTCGGTCACTAAGCGCTGCGTACCACTGGAGGACTGTCTGTCCACAGGATGCATACAGCTTAATCCTGAAGGACATAAGGTTTGTACCTCATGCTGTGAAGGAACCATCTGCAACATGCCTTTGCCAAACAACGAGACCGATGCCATCTTTGCCACCACGTCTCCCCTCAACAAAACAACCAAGCTTGTACAGAACCGCTTCCTAATGACTGGAATAGTTGGTGTCAGCATCATTCTTTTCATGCTTGCGTAACATTCGGATtaaatttaaagcaaatgtgAAACTGACTATATTTATACTCCATCATGGGCCAGATTTAATATAAAAGTATGAAAATATAACATTGTTCGTTATGAATTATCTACAATATGACAACCCCTCTCGGCAGCACAAGTATACCCCAGTGCAGCTTTTGATGTCTTTTAGGATAGTTAAATCCCTTTTTGCTCATGTTATCCAGTCTAGAACATGGaagtcatttttgtttattcatattttgagatattttgAGTTTTGCCTCTTTATGTTGTCTTTGTTTGTATATGTTGTGTACAGTAtacatagtatttatttttgtataatacactagaaaatttaaaatgttagatAAACATTAACCAGTTAAGATACAGCATATAACTTTCCATTTCGATTTTCCGGatgggaattattattttacatgtcatGCAAAAGGCATAACCTCTGGATTGTACTTTGTATGTATTGAATGTGTTCTTCTGCAAagcaaagaataaaaatgacagcttcaaCATTCCCGTTAGAAGATAAATGAATAGAATGTAAGTCACTGAACAGCAAGAAAGAGAAATGGACAAATCTACTGCATTAATACCATGTGCTTGGACATTTATACTAAACActtttttgattaaatatttaatgtgcaCATGATTTACAAAAAGATGTCTGTATAAGCTTGTCTGAGATCTGTTCAAACACTTAATACTGACTTTGCAAATATGTTATCTCTTAGGAAAGCTTTTAAGTTGTTCTGGGCTGCTTGCCCACAAATGTAGTATACTTGATTGCTGGTCAATTGTTCTGCAAAACTTACTTCTGTCTGATATGATGTAAGATAGTCATAATCTTATGACCTTAAAGTTAATCTAAAAACCACGATGTGTATGCTTTCAGTCACTTCTAATTCTGGAAATGTCAACTTTGCAAATAGTTTGACTatgatttctttgtttatttaaattaaataatggaataCATGACATGCGTTTACTAATAAACATTTCAAGACATATCATACAATGTACActgtcaaatgtaaatataaagtttTAAGTATGAATATTACAGTGCTGCCTGTTTGCATTTCATGCAGTTcagtaaaaatacttttaaaaagtgcatgTTGGATCTAACTAGATAAACAGTATGCATATGttcaaaactgtaaataaagtagatttttttttgtatgtattatttatgtaaatattgtaaagcTGTGAATATACATTGACACTTCATATTAAAACATACTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159108 lncRNA downstream 169764 6380963 ~ 6381248 (-) True G126887
TU159089 lncRNA downstream 215146 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 601118 5943386 ~ 5949894 (-) True G126767
TU158854 lncRNA downstream 978879 5569944 ~ 5572133 (-) True G126698
TU158803 lncRNA downstream 1086960 5462567 ~ 5464052 (-) True G126665
TU159209 lncRNA upstream 563293 7120244 ~ 7125041 (-) True G126977
TU159291 lncRNA upstream 1072964 7629915 ~ 7645722 (-) False G127039
TU159409 lncRNA upstream 2081645 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 2207162 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 2509889 9066840 ~ 9083586 (-) True G127229
AMCG00000880 mRNA downstream 194625 6340352 ~ 6356387 (-) True AMCG00000880
AMCG00000873 mRNA downstream 261433 6253900 ~ 6289579 (-) True AMCG00000873
AMCG00000874 mRNA downstream 339619 6198591 ~ 6211393 (-) True AMCG00000874
AMCG00000875 mRNA downstream 408435 6127419 ~ 6142577 (-) True AMCG00000875
AMCG00000866 mRNA downstream 540595 5985104 ~ 6010417 (-) True AMCG00000866
AMCG00000886 mRNA upstream 41901 6598852 ~ 6601477 (-) True AMCG00000886
AMCG00000887 mRNA upstream 67306 6624257 ~ 6662496 (-) True AMCG00000887
AMCG00000885 mRNA upstream 108351 6665302 ~ 6678106 (-) True AMCG00000885
AMCG00000888 mRNA upstream 132617 6689568 ~ 6715587 (-) True AMCG00000888
AMCG00000889 mRNA upstream 191376 6748327 ~ 6752464 (-) True AMCG00000889
TU158856 other downstream 977985 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 1914496 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 2894451 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 3401760 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 3417195 3131714 ~ 3133817 (-) False G126096
TU159187 other upstream 155007 6711958 ~ 6733817 (-) False AMCG00000888
TU159288 other upstream 1072964 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 2862045 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 3717736 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 4140756 10697707 ~ 10700348 (-) False AMCG00000960

Expression Profile