RNA id: AMCG00000888


Basic Information

Item Value
RNA id AMCG00000888
length 5316
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00000888
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6689568 ~ 6733817 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGGAGGAAAGGAATGTGAAGGAGGGGACAAGGATGGGGGACCACCTGCTGCCCAGGTTCCCATAGGCTGGCAGCGCAAGGTGGACCCCAATGGAGTGGTTTACATAAGTCCCAGTGGCTCGGTGTTGGCCTGTCTGGAGCAGGTAAAAACCTACCTCCTGACAGATGGGACCTGCAAGTGTGGCCTGGAATGTCCTCTCATCCTTCCTAAGGTGTTCAATTTTGATCCTGGGGCTGCTGTCAAGCAGAGAACGGCAGAGGATGTGAAAGCAGATGAAGACGTCACCAAGCTCTGCATCCACAAAAGGAAAATTATTGCTGTTGCAACGCTACACAAGAGTATGGAAACACCACATCCTTCTCTAGTTTTGACCAGTCCCGGTGGTGGCACAAGTGCAACACCAATGGTCCCTACACGTTCTGCTACTCCAAGAGCAATAAGGAATAAATCACATGAAGGAATACCTAATTCTGTCGCCCCAGAGTGCAAGAATCCATTCAAGATGATGATGGCAGGCCAGAGGCATTATCAACAGGAATTAACTGCAGGTCAACAACAAGAGCTTTATGCTGGCTATCCAAGACAAAGGCTTGGGAGCAATGACCATGGGCAGAAGTCTCCTTATCGTGGCAGTCATGGTGGGATGCTGAGTCCCGCATCATCTGGATCTCAGATATATGGTGATGGTTCGCTCTCTCCCAGGACGGACCCTTTGGGTAGCCCAGATGTTTTCACACGGAACAATCCCGGATTTCACGGAGCAAACAACGCTAGCCCCATTCACATGAACAGCAGGACTCCGCTTTCTCCTCCTGCTGTCCTGCATCATAACTCTCCTGCACAGTCGTCATGCGCAATGGCAGGAAGGACTAATATACCTCTTTCTCCTACTGTTACAACAAAAAGCCCCGTAATGAAAAAACCCATGTGTAACTTCCCTGCTAATATGGACATGCCACGAGCAGTATTTCACCACAAACCCCAGCAAGGGCCCCAtcctccacctccaccccccCTTCCACCTTCCTGTGCTCTTCAGAAAAAGCAGATGACTTCAGAAAAGGATCCCCTCGGCATTCTGGATCCGATTCCCAGTAAGCCAGTTAACCAGAATCCAATGGTCATGAACCCCTCTAACTTCCAATCAAATGTCCACTCTCAGGTACCTATGATGAATGTAAACATACCCCCTGCTATCGTTCCTTTGCCAAGTAACCTCCCTTTGCCAACTGTTAAACCTGGACCCATCAGTCATGGCACCCACGTTCAGAGAGGTCAGCACACAGCTTCCACCTCTATATCGCCCTCCCCTGTGACATCACCAGTGCACATGATGGGGCCTGCTATGGGGAGGATGGAGGTATCTCCACAAAGGTCACGCTCATCTTCCACCTCTTCAGACCATGGGAGCTTCATTATGCCGTCAGGTCCTCAGGGTTCCTGTGGCAGCATGAAGGTTCCTCCCAGGTCTCCCAGGTCATCCATGGGTTCTCCAAGGCCTTCTATGCCTTCAAGTCCATCAACGAAGCCAGACGTGCTCCATCAGTACAAAGACATCCCCAATCAGTTGCTCGTGGGAATGAGCAATGTGCTCAACAGTCAGCCCAATTCGATGTTTCCACCAGTTTCTGCTGGAAACGCTCCCCAAAAGAATCACCCGGGCCTGCTGGGAATGCCCCTTAATCAAATCTTGAATCAGCATAATGCTGCTTCGTTCCCAGCAAGTAGTTTACTGTCAGCAGCAGCCAAAGCACAGCTAGCGAATCAAAACAAACTGACCGgcaccaacaacaacagcagcggAGGGAATAGCAGTACCAGTAGTGGTAGCAGCAGTGGCAACTCTGGTGCTGTTGGCAGTGGTGGCAATGGAGAAGGGCACAGcactttaaatacaatgtttccTCCTAGTACTAACATGTTGCTGACGATGAGTGAAGGGCAGAGCGGACGTGCAGCACTACGTGACAAGCTTATGGCTCAGCAGAAAGATCCTCTGAGAAAGCGAAAGCAGTCGACCAACACGGTTTTCAACATGCTGAAGTCCCAGATGAGTGCTCCAGGAGCTCCCAAGCCTGGACCACCTGACCAGCTTAGGAAACCTGGGCAAGGTCCTCTTCCCCCCAATAACTCCATGGCTCAATTACTCCAGTCCATGAGCTGTCAGAGTTCCAACATGGCTGGAAACAATGGGGCTGCTTGTGTGAGCTCCAACTCTGGCATGCCATGTTCCTCCAACCAGTTGCATTTTCCAGACAACAATCTGACTTCCGGTCCGTCACAAAACCTGCCGGTGCAACACCTCCACCCCCGAGGGAATGGAATGCACTGCCAAAACGTCGACACTAACTTGGTTCACGGGGGAGGCCACGGTCCACATGGCCAGTTtgctggtctgatgaatcagaTGCAGGCTTCTGGGAATTGTGGGGTACTTGGACAGGCTGGAATAGCTTTAGGAAATTCTATACTTGGACATCCTAACCCTCACCAACAccaactgcccccccaccaccaccaccaccaccatcatcaccaccaccaccaccaccaacaccaaCAGCAAAGCAAGCCTCATGCAAGGAATCAAGCCGCCTGTGCGCCGATGGTACCGAACAGTAATGGAAGCAACTGTGGCCAGGTGATCTCTGATGCCGGCATGAACCAACAGCAACAGCTGCAGCAGCAACAGCTTCTAAACCAGAATCTGCTAAACATGTTACCGGCTCCATCAGGAGACAGCAAGTCTGAGATCAATCTCCACTCTTTGGGCCTCCTAAACCCCAACCTTAACGCTGCTTTGGCTTTGCTCTCCGGTGATATGGACGGGCACTCTTTGCCGCCGGTCCAGGTCCAGCTCCTTGCAGCCCTGCTGCAGAATCAGGCCCAGGCTGCTGCCATGCTTCCACTGCCGCCTTTCAACTTGGCCCTCCCTGACTTgttacagcagcagcaggacagCAATACTTTACCTTCCATGCCTCCAATGCCCATTCTGCCTGACCATTTCCAACATAGCCAGTTAGATGGCAATCAAGCAGAGGCTTTACTGTCCCACCCACTGGTGAACTCTTTAGTGGGCCTTTCAGGCAATGACACTACTGCTAATCCTTTACTCCTCCCAGCTGTCACTGGGGCCTCAGGGCTAATGTCCTTGAATCCCCAGCTGTTGGGAAGCCTTCTGAACTCTGCAATGGATAGTACTACTAATCATCCTGAGGTTCCCATAGCAACCTCCTCCCAGGCAACCACTACCACAACCactacatcatcatcatcactggcAGCCATGGCTGTCTCCTCACTGGGTGGGACAGCTGTAGTGTCAATGGCAGAGACTCTGTTGAACCTTTCAAACAACTCTGGGAGCACAACAGGACCCTCCAAACTCCTCAGTGGTTCAGTGATGCCACAGCTGCTGAACCCTCTGCTTGGCACAGGGCTACTTAGTGATGCCTCTTCATTAAATAACAGTCTGAACAACACACAGCTGGGTAACATTCAGTCATTGATCAACAACAGCCAGATGTTTCATCAGAACCAACAGCTGCTCCAGGGCCTGCATGGGGGGCAGGGCATTCCTGGGTTCCAAGGACAGCACCCTTTTCCCGAGAGCCCCTTCCCGGACAATGCCTCAAACCCCATGGCTTGCCTCTTTCAAAACTTTCAGGTGAGTTTGCCTGAGGATATTACGGCACCCAACAAACAGATGACCGCTCAGTCTGGGATGACATCGCTCCAGGAGAACTCCAACGTGGCTTCACTCCACCCATTCCGCGACGGATCATGTGACCTTCAGCCCCAGAACGTGGAGCCGGCCACAGGTCAGCCACCCCGGGAGAGCCTGCCAGGTGCCGGGCCCGGCGGGGACTCTTCTGTGGATGCGATTTACAAAGCAGTGGTGGATGCTGCGAGCAAGGGCATGCAGGTTGTCATCACCACCACAGTGAGCAGCACCACGCAGATGAGCCCCATTCCAGCTCTGAGTGCCATGAGTGCCTTTACCGCCTCGATCGGGGATCCCGTCAACCTCTCCCACGCCGTCAACGCCGTCATCCATGGCAGGAGACCGGCCGGCCAGGAACCAGAACACCGTGCCAGAAACGCCAGGGGGTCACGGGTGCGGAAGAACTCGGACCAGGGCAAGAGTACCCCTGAAGGTGGGGAGGCTTACGATTATTTCAAATCCCCGGGGCGCAACACCCCGAGGAAGCAGTGGGAGGTAGAGCCGGTCCCGGGAGTGGAGGGACACCCGTGGAAATGCGATGAGTTTTTAGAGTGCTCCAGCCATGAGAGGCTCGAGCGCACGGTGGAGAGATGTGCACACATTAATGGCAACCAGAGCCAGCCAAGCAGGGGCTACGGTGTGCTACTGAGCACCCCCAAGCACGACCTGGCCACAGAAGACCAGTCTCCCAGCTCCTCCACGAGCTTGGAGGGCTCGCTGGTCAAAGACTACATCCATTATAATGGAGACTTCAGTGCAGAGAGCATTAATGGGTGTGCGCCCAGCCCGTCAGACACTAAGAGTATCAGCAGCGAGGAAGATTTGAGGAACCCGGACTCTCCTTCGTCTAACGAGTTAATCCATTACCGGCCAAGGACGTTTAACGTAGGTGACTTGGTCTGGGGCCAGATCAAAGGTTTCCCTTCATGGCCTGGTAAACTTGTGAGTGAGGAGGAAGTGCACAATCCCACTGTCCAAAACACTGAGCAGGGGAAGGTGGAGCCCGAGAAACTGAAGACACTAACTGAAGATCTAGAAGCCTTCAACCGCGCCAGGAAGAGAAATAGAAAaaGTGGAAAGTTAAATAATCATTTAGAAGCTGCTATTCACGAGGCTATGAGTGAACTGGACAAAATCTCGGGCAGTGTTCACCAGATGCCACCAAGAGACAGACAGGTCAAGCCACCGAAGCCCAAGAGGAGGAAGATCTCTAGATAACATTGAATGTTTTCATCAGCAGTCCAGTACCCGTCAATGGAACTGTGTATATACATAGTCTTAATTGTTAACACCCCAAGGTGCTACAGTCAAACCGTGGTACAGTATTTTTGAAGACAAGGGACAATAAAGGTGCTGGATAAGCCAATCAGAAAACTGTATGATCATGGTTGCAATTTGTCTACAGCTTGCTGGAGAACTATTTTTTTctagaatatattaaaaaaaaaaaactgcatacaAGAAAATAGACAGTCCAAATATTTctgatacattttcaatatgtatatagataatGCAGAATTTCATGGTGATattcagagaagaaatgtaaatattgtacaatATTGTCATGTACAAGCGTAC

Function

GO: NA

KEGG:

id description
K23219 MBD5; methyl-CpG-binding domain protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159108 lncRNA downstream 308320 6380963 ~ 6381248 (-) True G126887
TU159089 lncRNA downstream 353702 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 739674 5943386 ~ 5949894 (-) True G126767
TU158854 lncRNA downstream 1117435 5569944 ~ 5572133 (-) True G126698
TU158803 lncRNA downstream 1225516 5462567 ~ 5464052 (-) True G126665
TU159209 lncRNA upstream 404657 7120244 ~ 7125041 (-) True G126977
TU159291 lncRNA upstream 914328 7629915 ~ 7645722 (-) False G127039
TU159409 lncRNA upstream 1923009 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 2048526 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 2351253 9066840 ~ 9083586 (-) True G127229
AMCG00000885 mRNA downstream 11462 6665302 ~ 6678106 (-) True AMCG00000885
AMCG00000887 mRNA downstream 27072 6624257 ~ 6662496 (-) True AMCG00000887
AMCG00000886 mRNA downstream 88091 6598852 ~ 6601477 (-) True AMCG00000886
AMCG00000883 mRNA downstream 132617 6551012 ~ 6556951 (-) True AMCG00000883
AMCG00000880 mRNA downstream 333181 6340352 ~ 6356387 (-) True AMCG00000880
AMCG00000889 mRNA upstream 32740 6748327 ~ 6752464 (-) True AMCG00000889
AMCG00000898 mRNA upstream 656333 7371920 ~ 7454374 (-) True AMCG00000898
AMCG00000896 mRNA upstream 887670 7603257 ~ 7618404 (-) True AMCG00000896
AMCG00000897 mRNA upstream 1503249 8218836 ~ 8232120 (-) True AMCG00000897
AMCG00000900 mRNA upstream 1574639 8290226 ~ 8296028 (-) True AMCG00000900
TU158856 other downstream 1116541 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 2053052 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 3033007 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 3540316 3131714 ~ 3149252 (-) True G126096
TU158093 other downstream 3555751 3131714 ~ 3133817 (-) False G126096
TU159288 other upstream 914328 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 2703409 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 3559100 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 3982120 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 6016597 12732184 ~ 12751516 (-) True G128160

Expression Profile