RNA id: AMCG00000891


Basic Information

Item Value
RNA id AMCG00000891
length 276
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00000891
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 7343870 ~ 7346591 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCTTCTGACCAGCTCAGTCCTTAACCTGGCTGAACTAGTTGCCCTCCGACCTGACCTtggcaaactgaaaaaaatccTGTATTTCCACGAAAATCAGCTTGTCTTGGTGGCAGATGTGGTGGTGTTTAACTCTTCTTTCAACATGGAGTCCTTCCTCACTTCCATCAGTACCTTCATGAAGCTTATTCCAGACCACAGACCCAAGGATTTGGAAAAGCTCATCAGGCCCAAGAGCCAAGTTCTCTACTTTCCGATCAAATTTCCTGATGTCAGA

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159218 lncRNA upstream 89728 7231353 ~ 7254142 (+) True G126982
TU159121 lncRNA upstream 595261 6685429 ~ 6748609 (+) True G126898
TU159147 lncRNA upstream 669643 6673612 ~ 6674227 (+) True G126919
TU159107 lncRNA upstream 962675 6380974 ~ 6381195 (+) True G126886
TU158992 lncRNA upstream 1130463 6213182 ~ 6213407 (+) True G126805
TU159276 lncRNA downstream 263026 7609617 ~ 7613856 (+) True G127033
TU159285 lncRNA downstream 283311 7629902 ~ 7645720 (+) False G127038
TU159286 lncRNA downstream 283311 7629902 ~ 7645720 (+) False G127038
TU159287 lncRNA downstream 283311 7629902 ~ 7645720 (+) True G127038
TU159352 lncRNA downstream 942198 8288789 ~ 8289806 (+) True G127091
AMCG00000890 mRNA upstream 36214 7288283 ~ 7307656 (+) True AMCG00000890
AMCG00000884 mRNA upstream 599900 6733807 ~ 6743970 (+) True AMCG00000884
AMCG00000882 mRNA upstream 802259 6532001 ~ 6541611 (+) True AMCG00000882
AMCG00000881 mRNA upstream 916932 6418882 ~ 6426938 (+) True AMCG00000881
AMCG00000876 mRNA upstream 978600 6362207 ~ 6365270 (+) True AMCG00000876
AMCG00000892 mRNA downstream 481081 7827672 ~ 7841512 (+) True AMCG00000892
AMCG00000893 mRNA downstream 513475 7860066 ~ 7942406 (+) True AMCG00000893
AMCG00000895 mRNA downstream 611258 7957849 ~ 7976053 (+) True AMCG00000895
AMCG00000894 mRNA downstream 630568 7977159 ~ 8061207 (+) True AMCG00000894
AMCG00000906 mRNA downstream 766391 8112982 ~ 8163986 (+) True AMCG00000906
TU157662 other upstream 5647623 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 5743231 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 7002099 339640 ~ 341771 (+) False G125561
TU159397 other downstream 1270608 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 2801266 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 4653073 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 7823320 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 8062521 15409112 ~ 15420880 (+) False G128823

Expression Profile