RNA id: AMCG00000892



Basic Information


Item Value
RNA id AMCG00000892
length 671
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00000892
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 7827672 ~ 7841512 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCTTTTACCAAAATGTCATCAACTAAAATGTCAATACGGATGTGTAATGACAAGGAATGGGACATTTTGCTATTGTGGAGATGGCTTTGAAGTAGCAGAAGATGGACAGAGTTGCACAGATTATGATGAATGCACAACATATGGGATTTGTAGCCAAACCTGTACGAACACCTATGGGTCTTATGGATGCAGCTGTACAGATGGCTATCTCCTGCAGTCTGACAGAAAGAGTTGTAAAGCCAAGACTGaacCCAGTGATAGACCACCTGTGCTCTTGATTGGAAACTCAGAAAATATTGCTGTAACATATCTTAACGGATCTACTATGCCAACCTTAAAGTCGTTGGATACCAATGGGACCCTAACATTGGATTTCAATTACAACGAAGAGTCAATTTGTTGGGTCACAGCAGTTGCATCAGCTAGTCAGCTACGATGTGCCAAGATGACAAAGTTGAAGGGTTTCTCTGAAGAACAAGAGAAAAGAACAGGACAAAGCCTACAAAATGTGGAACAAATGGCCATAGATTGGCTAAGTGGCAATTTTTACTTTGTGGATCGGGTCAGTGATCGAATATTTGTATGCAATCAAAATGAAGACACCTGCATCACACTGATTGATCTTGACCTTCATAACCCTAAAGGAATTGCTCTCGATCCTCTAACAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159285 lncRNA upstream 181952 7629902 ~ 7645720 (+) False G127038
TU159286 lncRNA upstream 181952 7629902 ~ 7645720 (+) False G127038
TU159287 lncRNA upstream 181952 7629902 ~ 7645720 (+) True G127038
TU159276 lncRNA upstream 213816 7609617 ~ 7613856 (+) True G127033
TU159218 lncRNA upstream 573530 7231353 ~ 7254142 (+) True G126982
TU159352 lncRNA downstream 447277 8288789 ~ 8289806 (+) True G127091
TU159357 lncRNA downstream 453006 8294518 ~ 8294873 (+) True G127096
TU159408 lncRNA downstream 797084 8638596 ~ 8639823 (+) True G127144
TU159484 lncRNA downstream 1239815 9081327 ~ 9082881 (+) True G127206
TU159589 lncRNA downstream 1521595 9363107 ~ 9377589 (+) True G127278
AMCG00000891 mRNA upstream 481081 7343870 ~ 7346591 (+) True AMCG00000891
AMCG00000890 mRNA upstream 520016 7288283 ~ 7307656 (+) True AMCG00000890
AMCG00000884 mRNA upstream 1083702 6733807 ~ 6743970 (+) True AMCG00000884
AMCG00000882 mRNA upstream 1286061 6532001 ~ 6541611 (+) True AMCG00000882
AMCG00000881 mRNA upstream 1400734 6418882 ~ 6426938 (+) True AMCG00000881
AMCG00000893 mRNA downstream 18554 7860066 ~ 7942406 (+) True AMCG00000893
AMCG00000895 mRNA downstream 116337 7957849 ~ 7976053 (+) True AMCG00000895
AMCG00000894 mRNA downstream 135647 7977159 ~ 8061207 (+) True AMCG00000894
AMCG00000906 mRNA downstream 271470 8112982 ~ 8163986 (+) True AMCG00000906
AMCG00000908 mRNA downstream 340865 8182377 ~ 8184025 (+) True AMCG00000908
TU157662 other upstream 6131425 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 6227033 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 7485901 339640 ~ 341771 (+) False G125561
TU159397 other downstream 775687 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 2306345 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 4158152 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 7328399 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 7567600 15409112 ~ 15420880 (+) False G128823

Expression Profile