RNA id: AMCG00000895


Basic Information

Item Value
RNA id AMCG00000895
length 1227
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00000895
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 7957849 ~ 7976053 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGGCTCCGTTGAAGGTCTAGCCTATCACAGAGCCTGGGATACTGTCTACTGGACCAGCTCCACAACCTCAACTATCACCAGACACACCATTGACCAGAACAGACGAACAGCTTTCAATAAAGAAGCTGTCGTCACGATGTCAGAAGAAGACCACCCACACGTACTTGCTTTAGATGAATGTCAGAATTTGATGTTCTGGACTAACTGGAATGAGCAGAACCCGAGCATCATCAGATCCACCTTAGCCGGAAACAACATGCAGATCATTGTCAGCACTGACATCCTTACACCTAATGGACTCACGATTGACCACAAAGCTGAGAAGCTCTACTTCTCAGATGGAAGTCTTGGAAAAATCGAGAGGTGTGAATATGATGGATCCCAAAGACATGTCATTGTGAAGTCAGGGCCAGGAACCTTTTTTGGCCTGGCTATTTATGGCGACTTCATCTTTTGGTCAGATTGGGTGCGGAGGGCTGTTCTACGCTCCAATAAGTACACTGGAGGTGAATTGTCTCCTTGTCGAGTGATGAATGGAGGATGCGATGATCTTTGTCTTTTAACTCCGAATGGATTGGTGAACTGCAGCTGCAGAGGAGAACGAGTATTGTTAGATGACAacagatcaAAAAACTCAACCTGCAACATTCACCTAGAGTTTGAATGCGGGAATGGTGAATGTATTGACTACCAGTTGACATGTGATGGAATAGCTCATTGTAAAGACAAGTCAGATGAGAAAATGCAATACTGTGACAACAGGAACTGTAGGAAAGGTTTTAAAACCTGCTACAATCAGCGCTGTGTGGCAAATAGCAGATTTTGTGATGGGGTGGATGACTGTGGAGACAATTCTGATGAAGCATACTGTACCAATTCAACGTGTTCTTCATCTGAATCCCGTTGCCAGGACGGAACCTGCATTGCAAACTCGGCTTGGTGTAACCAGATCATTGACTGTGTAGATGCTTCTGATGAAAAGAATTGCAATATCACAGACTGCTTAGATTACTATAAACTTGGGGTTAAATCTGCCGGGTTCATCAGCTGCAACTCAACTTCCCTTTGCATCCTTTCCAAATGGATCTGTGACGGGTCAAATGATTGTGGAGATTATGCAGATGAAACAAATTGtcaagTGGAAATTGCATCTCTAGTGTCTGGCTGTGTGATGGACAAAAGGATTGTGAAGATGGTGCAGATGAATACCAGTgtggtatgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159285 lncRNA upstream 312129 7629902 ~ 7645720 (+) False G127038
TU159286 lncRNA upstream 312129 7629902 ~ 7645720 (+) False G127038
TU159287 lncRNA upstream 312129 7629902 ~ 7645720 (+) True G127038
TU159276 lncRNA upstream 343993 7609617 ~ 7613856 (+) True G127033
TU159218 lncRNA upstream 703707 7231353 ~ 7254142 (+) True G126982
TU159352 lncRNA downstream 312736 8288789 ~ 8289806 (+) True G127091
TU159357 lncRNA downstream 318465 8294518 ~ 8294873 (+) True G127096
TU159408 lncRNA downstream 662543 8638596 ~ 8639823 (+) True G127144
TU159484 lncRNA downstream 1105274 9081327 ~ 9082881 (+) True G127206
TU159589 lncRNA downstream 1387054 9363107 ~ 9377589 (+) True G127278
AMCG00000893 mRNA upstream 15443 7860066 ~ 7942406 (+) True AMCG00000893
AMCG00000892 mRNA upstream 116337 7827672 ~ 7841512 (+) True AMCG00000892
AMCG00000891 mRNA upstream 611258 7343870 ~ 7346591 (+) True AMCG00000891
AMCG00000890 mRNA upstream 650193 7288283 ~ 7307656 (+) True AMCG00000890
AMCG00000884 mRNA upstream 1213879 6733807 ~ 6743970 (+) True AMCG00000884
AMCG00000894 mRNA downstream 1106 7977159 ~ 8061207 (+) True AMCG00000894
AMCG00000906 mRNA downstream 136929 8112982 ~ 8163986 (+) True AMCG00000906
AMCG00000908 mRNA downstream 206324 8182377 ~ 8184025 (+) True AMCG00000908
AMCG00000907 mRNA downstream 598787 8574840 ~ 8575310 (+) True AMCG00000907
AMCG00000903 mRNA downstream 614615 8590668 ~ 8608633 (+) True AMCG00000903
TU157662 other upstream 6261602 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 6357210 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 7616078 339640 ~ 341771 (+) False G125561
TU159397 other downstream 641146 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 2171804 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 4023611 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 7193858 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 7433059 15409112 ~ 15420880 (+) False G128823

Expression Profile