RNA id: AMCG00000896


Basic Information

Item Value
RNA id AMCG00000896
length 3680
RNA type mRNA
GC content 0.38
exon number 13
gene id AMCG00000896
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 7603257 ~ 7618404 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGAACCAGGAAGAGCAGTTTCACTTTTACAAACAAGGCAGGAGTTTATGGTTAACACAAGTCACCTTTATTCAGTTTGTCGATCccctgtttttgtatgataatattttttttcaaactgtATTAATTCAGGCCCTGTTCTTATTTTAATAGCTGTGTGCACGTCCAAGACAATACAAAGGTAACTTCATATTCATAGAGATGTATTGCATACAGGACTATGCTTACGTTATTACGAATAATAGGCGCTGTTGTGTAACCATTTTCTAAACGTCACATTAGACTTTGTAACCCAGCTAGGCACACAAGAAATAGATAAGTCAGTTTAGTATTGGACTGGTATTAAAACTTTTGAGACTCGGGGGCTTATCTAGACTAAAGCAGGGGAGGTACTGTGACCTTTGCGCAGTTGTCCGCAGCGCAGCTGGGACGTTTGCGTGCTTTTGCAAGGTTGGCACTGCGGATTGCCTCAGCTCTCTACTGCATAACCAGTGTTCAAATCTTCAGTCTATCATGGAGTTTTTAAATGGTAGATCACCAGGGAAGTTTTTGGAGCACACTGCCTCTGAGCTAGGCTGCAGCATCACTGCACAAGATCTGGCATTACATCTTGACAAATGTGATGAGATTCGACATCTGAGGGAGCAGTTTTTGATCCCTAAAGTCAAAGACCTGCCTCCAAGTGACCTTTCACTTGTAGATGCAAGTGAGgactgtatatattttgctgGAAATTCACTTGGACTGCAGCCTAAAGCAGTAAAGAAGTACATTGATGAAGAGTTAGATAAATGGGCAAAGATtgcAATTCATGGCCATTTTGAAGGCAGACTCCCCTGGGCTTTTGCAGAGAATTGTATCGAGAACATTATGGCTGAAATAGTAGGAGCAAAGGTTGAAGAAGTAGCTCTCATGAATGGACTGACTGTGAACTTACATCTTCTATTGCTTGCCTTTTATAAACCTACCAAGAGCCGACATAAAATTCTCATTGAGGAAAAGGCATTCCCTTCGGACCATGGCGAGAAAACTCTAAGACATGAAGACATTCTTTCTACAATTGAGAGGGAAGGAGAGTCAACGGCTGTCATTCTGCTCAGTGGAGTGCAGTACTACACAGGACAGCTCTTTGATATGGCTGCAATTACCAAAGCTGGTAAAAAAAAGGGCTGTTTTGTTGGCTTTGACTGTGCACATGCTGTTGGCAACGCTGAACTTTACTTGCATGACTGGGGAGTTGACTTTGCCTGCTGGTGCTCATACAAGTATATGAATTCTGGAGCAGGTGGTTTGGCAGGTGCATTTGTCCATGAAAAGCATGCTCACACTGTTGAACCCGCgcTTTTGGGCTGGTGGGGTCATAACCTGAAATCAAGATTTCTTATGAATAATGAAATGGATTTAAATCCCGGAATTAATGGATACCGGCTGTCAAATCAATCTATTTTATTGGTGTGTTCACTGAAGGCAAGCTTAGAGATCTTCAATCAATGTGATATGAAGGCACTGAGGAAGAAGTCCGTGCTCCTTACTGGATACCTGGAGTATTTAATTAAGTACTACCACACAAAGGATGCGGATAATCCACACAGACCTTATATCAACATCATCACTCCTTCAAACATCAAGGAACGTGGCTGCCAGCTCTCCTTGTCCTTTTCCATTCCtgttagagaagtattcaaaGAGCTGGAGAAGCGAGGCGTCTGTtgtGATATGAGGGAACCGAATGTCCTGCGAGTCGCACCAGTACCGCTCTACAACACATTTAATGATGTGTACCGTTTCATCAGTGCCCTGGGATCGGCCCTCACAGCCAGCCAGAACTCAAATGGCACACAGACAAGCCCGTGAATAAGAGGGACGCCTGATACTATTCACAACACTTGCGGATGCTATTCTTTATACTGGGAATGTTATACAATTCAGATGGAATAAAGTTGAAATCCTAACATTACCCTGTAACCTTCGTTACGGAGACGGGATATAAAATTCAGACTGAAAGGAGACGTGTGTTCATATGccaaaacaattgttttaacTATATTATATACAGAGTATGCTTTGATAAGTTTTTCTAACCCTGAAACCTTTTTCAAGTAGACATTCTCTAATGTTTATACATTCATGTGTAGCAAGTCATGCTATTGTAATATACACAGTATTTGTAGCTTTAAGTCCAAAAAATAAGCCAttatgtgatttttgttttttaactttctgatcccacaatgcactgcacaaATGTACCTTCTGTACTATATCACTTATATGTTTGGCAGAAACGTTCTGGAAATAAATTAGGAATTGATTACATTAATGCAGTGTTATACTACTAACCCTTTTACTTACAATTTAGATATCTGCTGTGTTGTTTGTCTTTCtaatgtacttttttaattactcaAGATAATAAGGGTTAAACAATCAAGCTATCgcttcagataaaaaaaaaaaagtgctttgaagCAAATACAGACATGGATTTTCAACCTAAAACCTTTAAGCATTTAACACTAGTGGCAAAAGTTACTTGAATTATTAGGCAGAGactaagtatttatttgttatgacTTGTCTCCGTAAGGTAGATTACAGaaatctatataatatatgctaattaaaaacatctttaacatttttcactggATCTAAATAGTAATTGAGTATTGAGTTATATAACATCTAAAAACTTCTGCAATTGTGAATGTGACCATTTTCTCAATCTGTTCATGCTTTGATTTACATGGGAACATACTTCTACATATAAACTGTGATGTTATTCTATAATTCAAAAATAACCAGGAAAGAGGCTTTTTGGTATCAGTTTAATTATATAGTATATGGTATGATAGCTCTCTGACTCATCTGTCTTTTAGCACAATTTTCTAAATGAAGGAAAACAGTGGTGtgtctttgatttaaaaatatttttttgtacaagCCTGCTCTGTGATTTGAGTTATTGAATTGGAAACTTTAGACTGAAAAAGATATTAGATGCATTAAAATATCTCCAGCTGCCCTTCACAGAATAATTTCCTCAGCTGTCAATACGTTTGTTAGCATATGCCTTTGTTATCACAATGCAATGTATAGAAGGAAACCTACTTGAAAATATGATAGTGGCATTTGCATACAGACAGATGTTTTTACCAGCAAGATTCACTAGTTGCTAACATGAGAATAAAAAGGAGAAGTGCAGATCGATGTATGAGTTGGAAATCTACATACGCTTCCTGCTTATAAggcttatttttcattttcatgtttttattgtaaattaaaatattggaaTATATATAAGTTGCTTGCATTGATTGGTTGATGTGTATCCAAAACTTAGAACACTGTTTCAGtctatttatttctgtacagAAATATTCTTCCAGGAAGTGGTTTGTAGGTTTGAGGGTTTTGTTATGAAGTCTGCATCTCACACAAGAAtggtgagaaagaaagaacgaGGTTTTGCACACGTGATGCTTCACACTTCCTCAGTTAGAGGAACCCTTTTCTCTTCACTTTAGTGGCAGTTTAATTGACTACACATACTGGCGGGTATAAGGTAGGAAACCATAAATCAACAGATTTAAAGTCTAATTGAAATATGTTGTTTGCGGCACCTGAATATTTAAGATTTTGAAGAAAGTTTatgacttttttaattttaacccaG

Function

GO: NA

KEGG:

id description
K01556 KYNU, kynU; kynureninase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159209 lncRNA downstream 478216 7120244 ~ 7125041 (-) True G126977
TU159108 lncRNA downstream 1222009 6380963 ~ 6381248 (-) True G126887
TU159089 lncRNA downstream 1267391 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 1653363 5943386 ~ 5949894 (-) True G126767
TU158854 lncRNA downstream 2031124 5569944 ~ 5572133 (-) True G126698
TU159291 lncRNA upstream 11511 7629915 ~ 7645722 (-) False G127039
TU159409 lncRNA upstream 1020192 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 1145709 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 1448436 9066840 ~ 9083586 (-) True G127229
TU159581 lncRNA upstream 1739944 9358348 ~ 9360596 (-) True G127275
AMCG00000898 mRNA downstream 148883 7371920 ~ 7454374 (-) True AMCG00000898
AMCG00000889 mRNA downstream 850793 6748327 ~ 6752464 (-) True AMCG00000889
AMCG00000888 mRNA downstream 887670 6689568 ~ 6715587 (-) True AMCG00000888
AMCG00000885 mRNA downstream 925151 6665302 ~ 6678106 (-) True AMCG00000885
AMCG00000887 mRNA downstream 940761 6624257 ~ 6662496 (-) True AMCG00000887
AMCG00000897 mRNA upstream 600432 8218836 ~ 8232120 (-) True AMCG00000897
AMCG00000900 mRNA upstream 671822 8290226 ~ 8296028 (-) True AMCG00000900
AMCG00000899 mRNA upstream 689481 8307885 ~ 8316601 (-) True AMCG00000899
AMCG00000901 mRNA upstream 709593 8327997 ~ 8345029 (-) True AMCG00000901
AMCG00000902 mRNA upstream 795039 8413443 ~ 8426125 (-) True AMCG00000902
TU159187 other downstream 869440 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 2030230 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 2966741 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 3946696 3652657 ~ 3656561 (-) False AMCG00000804
TU158094 other downstream 4454005 3131714 ~ 3149252 (-) True G126096
TU159288 other upstream 11511 7629915 ~ 7645722 (-) True G127039
TU159607 other upstream 1800592 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 2656283 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 3079303 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 5113780 12732184 ~ 12751516 (-) True G128160

Expression Profile