RNA id: AMCG00000900


Basic Information

Item Value
RNA id AMCG00000900
length 1852
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00000900
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8290226 ~ 8296028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGAAGTATTGTTCAGTTGTTTACATTCATGCATAGTTTGTAAATGTGGTCAGGCCAGTTTTATCTACATCCATCCTTTGATCTTAACCCTTATTACGGCATTATCACTGTCCTAAATCCTGAAACAAATCCAAGCAGACTGaaacaagacacacacagaggcacagtGAGCAGGAGAAAGCAATTTTCCCACAACAGAGCAACaagcCTTGCTTTCCAGATATGGCTTCTACTGCAACAAACCCTGCAGGATACCAGGGTCGTTATGCACAAAGTTTTCAGCTGTTCCTGCAGCGCTCCACTGAACACAAAAGTATATTTGGTTTCATCGACAGAATTCTCCAGGATGAATTTCCAAGTCTTGGAGATGGAAAATCAACCCTAAATGTTTTGGGTGTTGGAAGTGGAGGAGGGGAAGTTGATGCCCATGTGTTGGATAAAATGCAGGCTAAGCACCCAGGAAAGTCCATCAGTGCGGATGTAGTGGAGCCCAGCTCTGAACTGATCCAGAACTTCAAAgCACTGGTAGCAAAGACCCCAAATCTTGAAAACATCACTTTCAACTGGCATACGATGACAAGTAGTGAGTATGAAAATCAAGTGAAAGACAAGAAAGAAGCCAAGAGATTTGACTTTATTCACATGATTCAGATGCTGTACTATGTGGAGGACTATTCAGCAACTATCAAGTTTTTTCATAGCCTCCTTAAACAGAAGGGCAAGCTCCTTATCATCCATGAATCAGCTAACAGTGGTTGGGAAATACTGTGGAAGACCTATAAGGAAGCACTCTGCTCGAATACGATCAGTGCATACCAATCAGCGGGTGACATCAAAGTCCATCTTGAGAACCTAGGCCTAAAGTATGAAGAACATGACATTCCCAATACCCTTGATATAACGGAGTGTTTCATCGAAGGAAATGAAACAGGACAGCTTCTTCTGGACTTCATGACAGACAAACCATATTTCTATGAAAAAACACCTCCTGATCTGAGAGCAGGGATTCTAGACTTAATGCGAAATAAATGCAGCACAGAAAGAGATGGGAGAATCATTTTCAATGGTAATTTGACTGCTCTATTAATTCATCCGTAAAGTATGGGTATACAGTGACATTAAGCCTGAGTCACTTTACAAGAGTGTTTTGTCATAAAATCCCATGTCTCTTCTGTTACTCGGGTCCTGTGACTATAGTGTTTGAAAGCATGCTTATAAATGCAACGAGAACAATTTGATTGAAGTACAAAATGcagtcattattttttttcctgaatctTTATCTTagaataaacaagaaaatagaTTCAAAAGGACATATTAGTGGACCTCCATGTTTTCAGTTGAGAACACATCATCACCCTCATTGACAAATTCATAACACAGTGCATTGTATTACTATTGTAAACGTGGAGGCATATAATGGACATGTAATCATaagtcattcattttaaataaagaaataaatattgttaccAAAGCCGATAAGCAATATCTGAAAATGGTTGAAAGGTAATGTCTTTTCtggttatgttttttaaaactgcattatgCAAAGAGtgtacagaaacagaaacagaaagtaCTAGCCTTGAAAAGTGCTTcctgtgtttataaatatagttttaaaaagtttttattgGGCCACCATTATAAGTATGAATTCACATCATACTTACAAACATCAATTTGACTGGGGATTAACCCGGGCATTACAGTTACTGTACAAATCCACTAGGCTGTGCTATAGTTCAGACAATTCCAAACAACAATGTTAAATTACTTCAAGGAATTGTGGTaatgttttctatttctatgaatatgcatgtgtgtatgcatatatatatata

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0046539 histamine N-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159291 lncRNA downstream 644504 7629915 ~ 7645722 (-) False G127039
TU159209 lncRNA downstream 1165185 7120244 ~ 7125041 (-) True G126977
TU159108 lncRNA downstream 1908978 6380963 ~ 6381248 (-) True G126887
TU159089 lncRNA downstream 1954360 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 2340332 5943386 ~ 5949894 (-) True G126767
TU159409 lncRNA upstream 342568 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 468085 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 770812 9066840 ~ 9083586 (-) True G127229
TU159581 lncRNA upstream 1062320 9358348 ~ 9360596 (-) True G127275
TU159606 lncRNA upstream 1112165 9408193 ~ 9408469 (-) True G127291
AMCG00000897 mRNA downstream 58106 8218836 ~ 8232120 (-) True AMCG00000897
AMCG00000896 mRNA downstream 671822 7603257 ~ 7618404 (-) True AMCG00000896
AMCG00000898 mRNA downstream 835852 7371920 ~ 7454374 (-) True AMCG00000898
AMCG00000889 mRNA downstream 1537762 6748327 ~ 6752464 (-) True AMCG00000889
AMCG00000888 mRNA downstream 1574639 6689568 ~ 6715587 (-) True AMCG00000888
AMCG00000899 mRNA upstream 11857 8307885 ~ 8316601 (-) True AMCG00000899
AMCG00000901 mRNA upstream 31969 8327997 ~ 8345029 (-) True AMCG00000901
AMCG00000902 mRNA upstream 117415 8413443 ~ 8426125 (-) True AMCG00000902
AMCG00000909 mRNA upstream 321243 8617271 ~ 8625351 (-) True AMCG00000909
AMCG00000916 mRNA upstream 357974 8654002 ~ 8661631 (-) True AMCG00000916
TU159288 other downstream 644504 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 1556409 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 2717199 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 3653710 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 4633665 3652657 ~ 3656561 (-) False AMCG00000804
TU159607 other upstream 1122968 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 1978659 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 2401679 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 4436156 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 5060955 13356983 ~ 13359770 (-) True AMCG00001061

Expression Profile