RNA id: AMCG00000901


Basic Information

Item Value
RNA id AMCG00000901
length 1398
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00000901
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8327997 ~ 8345029 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTATGAGGCAGTCCCGTGTTACAGCGAATGCAGTCGGTACATCTGGGTGATGGAGGCCTGGTCCGTTTGTACGATTAACACTGTGGACAAAATGCCAGATTGCGGAGAAGGAGTACAAAGCAGAAAAATCAAGTGTGTGAATAACACAGGAGAAGGCCCTGGAGAGATTGTGGATGATGAACTGTGTGACCAAGAGGAAATGCCATTCAGGGCTCAGACCTGTTTTCTCCCATGTCCCGATGACTGTGTGATGTCCAGGTGGAGTGAATGGAGCAGATGCCCAATGCCATGTGACCAAACAGGAGTAAGAAGACGGATAAGACAAACCCTTAGACTCCCGCAGACTGGAAAAACATGCCCAGAGGACTCTGAGACTGAACCTTGCATTCTCAACACAAACTGCTTTACTTACCAGTACAATGTTTCAGattgGAGCACATGCCAGCTGAGAGAGAATGCAGTGTGTGGACAAGGAACCAAAACACGTCTACTGGATTGTGTGAGAAGTGATGGGAAGGTGGTGGAGCTAAGATATTGTGAACAGCGTTCTCGTACTGTAATACAGCCAGCTCATGAAGAGGGGAGACCTTGTCCTCCTCAGCTTTCTCAGGTCATCCCTTGTCCAGTCAGGCCATGCTACACGTGGGTACTGGGAGAATGGGCTCCGTGTCATGTGGAGGGGGCCGAGTGTGGTGAGGGGATTCGAAAAAGGAATCTAACATGTGTAGTGCACAGAGGCTCAGAGACTGACTTGTCTTCTGCCAAACCAGTGGAAGAGGAAAAATGTGATGCTAGGCTCATGAAAGCAAGTGGACAGACATTGCAATTGCCTTGTTCTGTACCTTGTCCAGGTGACTGTCATTTGACAGAGTGGACATTATGGAGTTCTTGTCAACTAACCTGCCTTGACGGGAGAAGCTTTGAGACAACCGGACACCAAGCACGCTCCAGAGCTGTGATCATTCAGGCAGTCGAAAATCAAGATAGCTGCCCACTTCAAGTCTTTGAAACAAGGCCTTGTAAAGGAGGAAAATGCCATAACTATGAATGGAGGACAAGCCCATGGAGAGACAATGAACGCTCAGTGTGGTGTCAGCGTTCAGATGGCGTTAATGTGACAGGAGGATGTTTTTTGCAGAATCAACCATCGACTATCAGGCACTGCCATCCACCTTGCACAAAACCCTTTTCCCACTGTACACAGAGTGGTGTCTGTGGGTGTGAAAATGGCTACACAGAAGTAATGACAGCATATGGTTTCCTCGATTACTGTACAAAAACTCCAGGAGCAGATAACAAAAAAGCAGATGTCAAAACCAGTGCTGGGAAATTCAAACCCGGGACTTCAAAGATTCAGGACTTTTTCAAAGAGTGGTCAATTCAACCTTTTGGACCA

Function

GO:

id name namespace
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0060415 muscle tissue morphogenesis biological_process
GO:0048644 muscle organ morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159291 lncRNA downstream 682275 7629915 ~ 7645722 (-) False G127039
TU159209 lncRNA downstream 1202956 7120244 ~ 7125041 (-) True G126977
TU159108 lncRNA downstream 1946749 6380963 ~ 6381248 (-) True G126887
TU159089 lncRNA downstream 1992131 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 2378103 5943386 ~ 5949894 (-) True G126767
TU159409 lncRNA upstream 293567 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 419084 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 721811 9066840 ~ 9083586 (-) True G127229
TU159581 lncRNA upstream 1013319 9358348 ~ 9360596 (-) True G127275
TU159606 lncRNA upstream 1063164 9408193 ~ 9408469 (-) True G127291
AMCG00000899 mRNA downstream 11396 8307885 ~ 8316601 (-) True AMCG00000899
AMCG00000900 mRNA downstream 31969 8290226 ~ 8296028 (-) True AMCG00000900
AMCG00000897 mRNA downstream 95877 8218836 ~ 8232120 (-) True AMCG00000897
AMCG00000896 mRNA downstream 709593 7603257 ~ 7618404 (-) True AMCG00000896
AMCG00000898 mRNA downstream 873623 7371920 ~ 7454374 (-) True AMCG00000898
AMCG00000902 mRNA upstream 68414 8413443 ~ 8426125 (-) True AMCG00000902
AMCG00000909 mRNA upstream 272242 8617271 ~ 8625351 (-) True AMCG00000909
AMCG00000916 mRNA upstream 308973 8654002 ~ 8661631 (-) True AMCG00000916
AMCG00000917 mRNA upstream 317088 8662117 ~ 8664221 (-) True AMCG00000917
AMCG00000914 mRNA upstream 545197 8890226 ~ 8900361 (-) True AMCG00000914
TU159288 other downstream 682275 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 1594180 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 2754970 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 3691481 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 4671436 3652657 ~ 3656561 (-) False AMCG00000804
TU159607 other upstream 1073967 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 1929658 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 2352678 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 4387155 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 5011954 13356983 ~ 13359770 (-) True AMCG00001061

Expression Profile