RNA id: AMCG00000902


Basic Information

Item Value
RNA id AMCG00000902
length 1599
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00000902
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8413443 ~ 8426125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTGAAGACTGTGGACCAGGGGGAGTGCAGACAAGGACAGTGTGGTGTGTTCACACCGAGGGCTGGACGACCCACCATTCcaactgcaaacacacagagaagcCTACAAGCCAGAGGGAATGTTTTAAAGTTTGTGAATGGCATCAAGAACTCTTCGAGTGGGAAGTGTCCGAGTGGGGATCCTGCATTTTAGTCCCTTATTTTTCTAACGAACTGAAGCTAAGGACTGCAGAGTGTGTAACCGCACAACATGGAATACAACAAAGGAAGGCGCATTGTGTTCGAAAGTCTAACAGGACAGTGGTGACGGAGAGGATCTGCGAGTTTTTCTCGCAGAGGCCGGCTGTGGAGCAGGCCTGCCTAATCCCCTGCCCACAGGACTGCGTGGTGTCAGAGTTCTCTGCCTGGTCTGGCTGTAGCAAGACTTGCGGCTCAGGATTACAGCACAGGACAAGGGCCGTGCTGGCCACCCCGGTGTACGGAGGTGCAAGCTGCCCAAACTTGACGGAAACCAGGAACTGCCATAACCAGTTTTCTTGTTCTGTGGGCGAGGATGAGTACAAATACAGCCTTAAAGTCGGGCCGTGGAGTGAGTGTAGGTTACCGCATCAGAAGGACGTCAAACTGAGTGGGAGGACCATGCtggattttaatattgaatCGGCGGAGAAAAATTACGTGAAGCGGCACATCCAGAACAGCCacaatcatcaccatcaccattcAAAGGCGTGGGACATAGAGATAGGTTACCAAACCAGGCAGGTCAGGTGTACAAGAAGCGATGGCAAGAATGCAATGCTCAGGTATGAGAATGTGACccTTTGTATTCAAGACAACGCACCGATGACCTTTCAGTCATGTGTAATTCCCAGAAATTGTGAAACCACAGAGTGGTCTTCGTGGAGCCCCTGTTCAAAGACCTGTCGATCCGTGGACTTATCTCCTGGCTACAGGACAAGGACCCGCAGCATGAAACAGGTTCCCCTTGGGGGAGGAAGAGAATGTCCCATTCTtgaagaaaaagaggcttgtaACATTATTGGAGACTTACTGCCTAATTGCCCCAGGTATACGTGGAAGACCACTGAATGGGGCGAATGTCAGGTGAGCCCTCTTCTCAGTCAACAGGATCAGCGTCAGAATAATCTCACTGCATTGTGTGGAGGAGGGATTCAGATGAGGCAGACATACTGTGTACAGATTCCAGATGACATGGTTTCACAACAAATTAAAGAAGtttctAGACCGGTGAATAGGAAACTGTGTCCGGGATCAGTGCCTTCAGCTGTTCAGCAGTGCAATATCCCATGCCCAGAGGACTGTTTAGTCTCGACCTGGTCTTTCTGGGAGCCTTGCATATATGGAAACTGCCTGGAGCCACAGGGCAAAAAAGGTTTTAGGCAAAGAAGACGTGAAGTGATTCGAGAGCCCACTGGCACAGCAGAGAGCTGTCCGCATTTAGTAGAAACTCTCCCATGCGAAGACCCTGCCTGTTTTCAGTGGGATGTGATTGAGGAGGAACTCTGTGTACCCAATAGAGGAACGTGTGGGCCAGGAATACAAAACCAGAAAGTCTTATGCAAGAACACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159291 lncRNA downstream 767721 7629915 ~ 7645722 (-) False G127039
TU159209 lncRNA downstream 1288402 7120244 ~ 7125041 (-) True G126977
TU159108 lncRNA downstream 2032195 6380963 ~ 6381248 (-) True G126887
TU159089 lncRNA downstream 2077577 6334713 ~ 6335866 (-) True G126873
TU158942 lncRNA downstream 2463549 5943386 ~ 5949894 (-) True G126767
TU159409 lncRNA upstream 212471 8638596 ~ 8639883 (-) True G127145
TU159428 lncRNA upstream 337988 8764113 ~ 8764392 (-) True G127159
TU159507 lncRNA upstream 640715 9066840 ~ 9083586 (-) True G127229
TU159581 lncRNA upstream 932223 9358348 ~ 9360596 (-) True G127275
TU159606 lncRNA upstream 982068 9408193 ~ 9408469 (-) True G127291
AMCG00000901 mRNA downstream 68414 8327997 ~ 8345029 (-) True AMCG00000901
AMCG00000899 mRNA downstream 96842 8307885 ~ 8316601 (-) True AMCG00000899
AMCG00000900 mRNA downstream 117415 8290226 ~ 8296028 (-) True AMCG00000900
AMCG00000897 mRNA downstream 181323 8218836 ~ 8232120 (-) True AMCG00000897
AMCG00000896 mRNA downstream 795039 7603257 ~ 7618404 (-) True AMCG00000896
AMCG00000909 mRNA upstream 191146 8617271 ~ 8625351 (-) True AMCG00000909
AMCG00000916 mRNA upstream 227877 8654002 ~ 8661631 (-) True AMCG00000916
AMCG00000917 mRNA upstream 235992 8662117 ~ 8664221 (-) True AMCG00000917
AMCG00000914 mRNA upstream 464101 8890226 ~ 8900361 (-) True AMCG00000914
AMCG00000915 mRNA upstream 476110 8902235 ~ 8908000 (-) True AMCG00000915
TU159288 other downstream 767721 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 1679626 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 2840416 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 3776927 4636096 ~ 4636516 (-) True G126427
TU158313 other downstream 4756882 3652657 ~ 3656561 (-) False AMCG00000804
TU159607 other upstream 992871 9418996 ~ 9419325 (-) True G127292
TU159787 other upstream 1848562 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 2271582 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 4306059 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 4930858 13356983 ~ 13359770 (-) True AMCG00001061

Expression Profile