RNA id: AMCG00000912


Basic Information

Item Value
RNA id AMCG00000912
length 4522
RNA type mRNA
GC content 0.36
exon number 10
gene id AMCG00000912
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8869964 ~ 8880928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGTATAGCAGTTTCACATATAATGTACCACAGTGCTTTTCAGCTCTGTATTAAGACTTAAAATACTTTGTTGTTCAtcaaaaaaaaatttaaaagtgGATATTATGTTCTagtaaaataatgaacataTAGCTTAGTGTTCTGGCATCCAGTTTATTCCTCCTGAAGATTAGAAGCCCTAACTACATTTCTGTTAAAAGCTACTTACGTTTCTATGTTATTGCTGTTTAGGTTTACACTCGATATGGGAAATGCTACACCTTCAATGGGCAGAAGAGTTTACTTAAGAAGACCAAGCAAGGGGGGATGGGAAATGGACTGGAGATAATGCTTGACATACAGCAGGACGACTATCTGCCCATTTGGAAAGAGACAAaccaAACCTCACTAGAAGCTGGGTTACGTGTTCAAATACACAGCCAGGACGAACCACCTTACATTCATCAGCTTGGATTTGGCGTCTCTCCGGGATTTCAGACATTTGTTTCATGTCAGGAACAAAGGCTGACATACCTACCTCAGCCATGGGGAAACTGCAGACCAAACGGTGACACATTGATTCCTGGGTATGAAACGTACAGCATCAGTGCCTGTCGGCTGAAGTGCGAGGCAGAAGACGTGATAAAAAGGTGTCACTGCAGAATGGTGCACATGCCAGGGAATGCAAAAATCTGTACTCCCAATGATATAGAATGTGTCGAGGAGGCCTTGTCTGGTTTTCAGAAGAAGACCAATGATTCTTGTTCCTGTGAAACACCTTGCAATCTGACCCGCTATGGGAAGGAACTTTCTATGGTGAAAATCCCCAGCAAGGGGTCTGCTCGATACTTATCAAAAAAATTCAACAAGACAGAGGCATACATTAGAGATAATTTTCTTGTTCTGGATATTTTTTTTGAAGCCCTTAACTACGAAACAATAGAACAAAAGAAAGCATATGATGTGACAGGCTTATTGAGTGACATTGGAGGTCAAATGGGATTGTTTATTGGGGCCAGCATTCTTACCATTTTGGAAATACTTGACTACATCTATGAGGTGATGAAAGATAGGCTTCAGCGACTTATGAAGCCCCAGAAAGATGAAAACAAGAAGCAGTCTGGCAGCATAGCAACTCTGGGATTGGAAGATATGAAAGCCCAGGACACCTGCGAAATGATCAGAAGCCACCCAGAAGGAACGTACGCGGCCACAATCCTTCcgaaccaccaccaccatccgCACCACGGTGTCTTCGAAGATTTTGCCTGCTAGAGCTCCgggatatattttttctcaacaataaaatactgtttctgTGCTGGAAGTGGGCTTTACTACAGACCCTTGGACATAAGATATCAGTTCTACCTTTTTGCTGTCACCAGTGAAAGCTACAGCCAAAGTCTAACACCAAGCCTGTGCTGCTAACAGACTTACTCAACAGCACAGATTGGATTACACAACGTGGTCCTACTGAATACTTGTACCTTTTGTTCTCCTCTTCTGGAAAGCTATCTTCTCAGTTCCTTTACAGTTTCTATACTGTGGATTTTGCTATGGTCactattgaaatacaaaacaaggaCTGCATGTCACCTAGATAcaatttatactttttaaaataacctaaaaCGTAGATATGTCTGACTTCTTAtgtcacattttgattttgtatatgtatgtattctgaAATGCATACTATATTTAATGAAGGTTCTCatccaatttattttcatgttcaaTTGACATTTTCTCTGTCCCTTTaccagaagaaacaaaaccatttaaaacgAGTGGTGAAAATAAAGAAGGTTCTGCATTAGCTGCGGTCATTACAGTTCCCTGCGGAAGACATTCTGGCTGATTGAAATGATGACTACATTAATCAGCACttaatttatgaaaacaattaaatatttttttatttggtgtaagttaaatgtaatgaatatataatacatatgaaAGTAAATTAGAGGCttgatattgtttgtttattttctaatgtaatttataaataagggagaacaatatttttaaatgaaaagataaatgaTCTAAAGCAGTCACATTGAAGTCTtctattacatttgtttatgaatgttttaaaatgcttggTCTCACCAACAATTATGACATTACAgttcagtgaaaacaaaaccaaacaaatcaatGTAATATAGTTATCTATATACATAACCCTCGAATATATAGAACTGTTCCTGTCCTGCCTCATAGTAGCTGCTGTAGCTGTGGCCTCATTGCCCGGGGACCGGTTCCAAATCAGTCGCGTTCAAGCAGGATTTTCTTGTATCCAGGAAAACGACCACTTGTGCCATTGTAATTAGTGCATTTAGTGTGATTTCTCCTCATGCCATAACTTCACGCCCACCCTCGATGTCTCCGTCAGAGATCAGAGCTCAGAAATGGCAACGATCAAGTTCTTTCCCAAGTTGCGTGTGAAGTTCCACTGCTCCATGGTCCAACACATGATTCGCTACATCTCCCCAAATAAGACTATAACTGGTTGTCTGGAGCTGATATTTGTGTAGCCAATGcctcatttatttgaattgattCTAAACTTCAAAGTGCCTCTCATGGGGTCAGTATTAAACTCCTCTGTGTTGCCCCCTAAGTCTCTTCTGCTGTCACCAAGCCCAAGTATTTCAGAGAATGGCCTGCCACCATCATACCAATGTTtctgcacagaaataaatacatttctttctgacACACCAGAGATagatatgtaaaaatatgtcttctccttggattttcttttaaattatatcttGCTGTGCAGCGTACTTTACAGCAAGTAGTGATATTGAACAAATCAGaagtattaaatgtaaaatacttgaATTTTGCCAAAGTATACTCCTAAAcccagattaaaaacaaaacttgtatactaaagtagaaaaacagaaaatagaaaactacaatCGTGTACTCAGTGGCGGCTTAATGTGTTGTCAGatgcttttttcttctactcataaataTAACTGCTATAAAGTATaaatgtgtagttttctattagtgggtgggtcaactTTTTTGACGTTTTTATGGTCAGATTGTTCAAGTTTTCATTGGGCTTTTACATACAGGCCCATTTTTATGTACTCGTAtatgacaaaatacagaaagCTAGGTaggcagatttttatttttattttattttatttttggatgaaAAGAACCTATAGACTGATTTCAAACAATATTGTATCATCTTCCATATCACTTTATGAACCTTATATATTACACTGCCAAGctatcattttcatttgcatcatTGTTCTTGCAACACAGTTTATTGCTTCAGCAAATCCTGTTGTGTATTCATAGTAAACAGGAAatcattatattaatacataatcagtgtctgtatatgtaatcatatatatttaaattatatttccatgtatccttttctttttcaaatttaaatttacaaaactgttaatcaatataatttcattaaaacatatatcAATTCACTGTATGCACCATTTATAACTAACATTGCATGTGTACCGGTTATCCATGAACACTGCATGGctgtaacatttagaaatcATACACCTAAAAGCGACCTCTGTAGAGGGTCTTCTTCATATGCAAGCCTCTATTGGCACAATAAACTGGAAATGCTTATTTAAGTAATCTCATCACATGCATAATCATATATTCACAACAGGTGAAATGCACAGAATGATGAATATTTCATGGGAAAAGGGTTTGGGTACTATTTGActtctgctttattttgtaCTTCCTTCCTAACAGAATGAAAATGATTCTATGCTAACCAATCTCGCAATTAGACAGATGCTTTATAGaaccaatgtttttttgtttttgttttttagatccACCATCGGTAATTAATATCATACCTTCTAGAAAACTGTggctgaaaaatattttattaaggagTTGTATTGATTGTTGTGCATATAACTGTGTTTGATTTCAAAATCCTAAACCTTGAGTAGCAATCTGTATCTTATTTCTATACAACGGTACACCTGGTGTCAAAATTGTAGCCTTTTCCTGATTTTCTTGGTTGatcataaacatttataaatgtgtaaaatatctGTCTTAATTGTACactcctttttatttattttgaagaattgTTTGTAATCCAAACTTCTgataaattaaactgtacacattgtatttttttaccaaTTTGTGCATTTGGTTGTCTTtctatgtaatgtatttttgttttattttttacttgagTGTCACCATGTACAACAAAAGAGAGCAAGAAAGTCATATAGTAAGATGCCAGTGGGGCACACAGCATATCACTGTTAAGATTACAAGCAGAGGGTTAACGACAAATTATACGCTAAACTTTTAAGTTGGGAAAAGGAATGGACTTTACATTGCAAAGAAtgggaaatgcattttgtacagAAGTCTACTGTTGTGACTGTGAATTATTTAGTTTAAACacattgtataaatgtaataGCAAATTAAAccgattaaatattaaaactaaaa

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG:

id description
K04831 ASIC4, ACCN4, BNAC4; acid-sensing ion channel 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159408 lncRNA upstream 230141 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 575091 8294518 ~ 8294873 (+) True G127096
TU159352 lncRNA upstream 580158 8288789 ~ 8289806 (+) True G127091
TU159286 lncRNA upstream 1224244 7629902 ~ 7645720 (+) False G127038
TU159484 lncRNA downstream 200399 9081327 ~ 9082881 (+) True G127206
TU159589 lncRNA downstream 482179 9363107 ~ 9377589 (+) True G127278
TU159869 lncRNA downstream 1562065 10442993 ~ 10444937 (+) True G127509
TU160196 lncRNA downstream 2790840 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 3213213 12094141 ~ 12096863 (+) True G127924
AMCG00000911 mRNA upstream 70343 8798586 ~ 8799621 (+) True AMCG00000911
AMCG00000913 mRNA upstream 217917 8646653 ~ 8652047 (+) True AMCG00000913
AMCG00000910 mRNA upstream 224767 8641674 ~ 8645197 (+) True AMCG00000910
AMCG00000905 mRNA upstream 234084 8628581 ~ 8635880 (+) True AMCG00000905
AMCG00000904 mRNA upstream 253430 8609600 ~ 8616534 (+) True AMCG00000904
AMCG00000919 mRNA downstream 37824 8918752 ~ 8929267 (+) True AMCG00000919
AMCG00000918 mRNA downstream 62914 8943842 ~ 8960784 (+) True AMCG00000918
AMCG00000924 mRNA downstream 151228 9032156 ~ 9033118 (+) True AMCG00000924
AMCG00000928 mRNA downstream 397266 9278194 ~ 9281019 (+) True AMCG00000928
AMCG00000927 mRNA downstream 413543 9294471 ~ 9358158 (+) True AMCG00000927
TU159397 other upstream 249769 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 7173717 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 7269325 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 8528193 339640 ~ 341771 (+) False G125561
TU159756 other downstream 1266929 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 3118736 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 6288983 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 6528184 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 9142132 18023060 ~ 18044251 (+) True G129365

Expression Profile