RNA id: AMCG00000918


Basic Information

Item Value
RNA id AMCG00000918
length 3545
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00000918
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8943842 ~ 8960784 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGAGATAGACAGGGAGCTGGGAGTCCCAAATCAGCCGCAGTCCGGGTACAGTCCAATGCAAATCATATCAGGTTggatcattaaaaataaaaggacacaGCTTCCAGGCACATCTTATGCAGTGCACGTCTTGCAGAAGTTGCAAAGAGCTCAAGAAAAGCCAAACAGATCAACTTTCTGGTCACAGTGTGCCATCAATAATGCGGTTATGTGTTTGACAGGTTATAGCTGATCACAATTCTGTGTCTCGTATCTGATTTAAATTGAGCAGCATCTGTCCGCATTCATCTGAGCGCATATGGCCGgataggggaaaaaaagacagttTTCGttcactttaataataataataaaaaaaaaaagcttgaatCTAAAAAGAGATATTTTACCAGTACTTCGAAAGGATTTGAAGATTGtctcaaacacacaaaaactatGGAGGTCTTGATACTACATCTCTTTCGCTCGTTAATGGTTGTGGCTCTGTTCATGCAAAGggtAGACTCAAATGAAATCTTGGGACTGAAAATCCCATTTGATCCAATTCTGAATGCCAATACGGTTTGCTTGACTCTCCCTGGCCTGACACGACGACAATTGGAAGTTTGTATGCGCAATCCAGATGTGACAGCATCTGCTATCCAAGGGATCCAGATTGCTATTCATGAGTGCCAGCGCCAGTTCAGAGGCCACAGGTGGAACTGCTCCAGTCTAGAAACAAGGAATAAGATCCCATATGAGAGTGTTGTTTTCAGCAGAGGGTTCAGGGAGAGCGCTTTTGCATATGCAATAGCAGCTGCAGGTGTGGTCCACGCAGTGTCTAATGCCTGCTCAATGGGGAAGCTGAAAGCATGCGGCTGTGATGAGAAGAGGAGAGGGGATGAAGAGGCTTTTCGTATCAAACTGAACCGACTGCAGCTTGAGGCCATCAACCGTGGAAAAGGGATGGTTCACGGAGTCATGGAGCACATCCCAGCTGATGCACCCGGACCCCAGGATTCCTGGGAGTGGGGGGGCTGCAGTCCCGATGTTGTTATGGACCATATGAAGCGGAAATGTAAATGCCACGGCACGTCAGGAAGTTGTCAGCTCAAAACCTGCTGGCAAGTCACCCCAGAGTTCAGAGACGTGGGGTCACTTCTCAAAGAGCGCTTCCACATAGCAACGCAAATCAAAGCCCACAACCGAAACACAGGCCAGGTAGAACACGCCCACCCACCACATCGACGGAGAGCCAGTCTCAATGAGCTCGTCTACTTTGAAAAATCACCCGATTTCTGTGAAAGGGAGCCGGAGTCAGATTCTGCTGGAACGCAGGGGAGaatctgtaataaaacaagTCCGGGGATGGACAACTGCGAAAGTCTTTGCTGTGGAAGAGGACATAACATCTTGCAGCAGACCAGGAGTGAAAGATGCAACTGCAAGTTTCACTGGTGTTGCTATGTGGTCTGCGAGGAGTGCAGGATAACAGAATGGGTTAATGTGTGCAAGTAAAAAGACCATTCGTTATAAGGATAGTGACATGTCTGGACTGTCAGATACTCTTTCCTTCGCTGTGGACTGCCGATTTCCATATTTAAGTATGGAAGCACAAAACATGACTGGAACACGTGCAAGTGTGGAGTACATGTGAAATGTACACAGCATGAGATGTAACACTAGAGTACGGATTGATTCTTTAAATCTGCACTATTTTTCATTTACGAAAAAAGTGTTCTtaagttaaataatttaaataaaacaatacttttttattttttattaagaacTGAGCACTCCTTAGTATTTAAGTAgagatttaaaactgaaaacttgcTACAGGTGTTGTACTTAACATAACCATTTTACGAAGACACATAATGGGATTGTGgtactgaaaaagaaaaggaaacaaaaaaacaccaggtTTGAAAAACGACCAACAGACAAAGATGCATGTTGTTTTCCTTGTTCCCTATCTGTGTGCTCATCCCAAAGGCCTGtcatttaataaatgcacatcaatataaaacacaaatgtttgtttaaaatgcatttatagatACTAAATTATGCACTGCCAGAATTTGTTCACCAaagtttttctgtgtgtgtttttgtcgtTATCTTCTGAAATGTAGGCAGACAATTATATTATCAGATATATTAATCTAAACATGGTGTAAGTACAAAATTAATCCTTGATGCTTCAACtgtaacaaaaatattattggAAAAGAGTGAGCATACACCTTAGGTCATGCCAAATGCAGTTCACCTGGGAGGGAGATATTTTGTCTACTGTAGGTTAGCTTACAGGAATGTCAGATGTGTTAGTTTCCCCGCAGTGATGTCTacaaatggattttgttttcagttttcagtagTGTTTGTGGAGATGTCAGTGTGCATTTAGGAAAAACCCTGTGTGAATGCAATTCTAATTTCACCAAGCTGATGTTTTACAGTTTGGGAGTCAAAAGCACCAGGAGTACAGAATCTACATTATATCACTAAATGTACTGAGGAAGcagtaaaatggaaaaaaggttTTCGCAAAGTATTTAATTGGGTCTTAGCCCAATCTCGACTGTTGCAATCCTTTTGATGAATGGTAGAAGGAATACTGTGCCATTACCCATGCAACATAGTTTGTAGTGCAAAGTAATTTTCTGTGGCCTCTTCCAATTCACCCTCAAGGTGCTCCGTCTTTGATCTCAGCAAGtgaaatacttttaattgttatttttcaatcaCTTTGTTACACTCCCAATCTTATGAAGTGGTGCAATATAATGGATGTACAACCCTTCACATTAAAATCCCATCAAAGCTGGCATTACACCGTTGTCCAAAATAACATGTTCTAGTGCTCACGGTTGCCCTCACAAGAAACAATAACTACACAGGACCTCTGGTACATCCGTTACTGTGGAAGAAAAGCCACATCCCATTCTTTTGGTAATATATTACGTGTACATCTATAGACTGTGGCTTATTCACACTTTGTGatgcaatttaataatttgcacAGGTGTCTTTGACATTGTTCTGGAGAAACAACTGTGTGATGGACTAACAATTTTGGATGGTTAAAAACCCTCCAAAGATgcctcaaaatacaatttatcatTGTAtgaatttatgttttaagtttgttgatatactgtattgtaagttattttttgtgaatTGCCTATTTGTAAAATCAATTGTCTTCAGAGTCAACACTTATAAATATTAAAGGGAATTAAATGGTGATTATGGCTtgataaaaaatgattaaaagaaataagatgtgcgggggggggggaacagcaaataaacattgaacttgtttttatacaaatcaTTAAGTTTGGATTGTAAAACCATTGAATTACAGAAGTGTTTTTACAGTTACACATCTTTTCATTGTGCCATTTAGATTTTCTCTATCTCTTACAGTCTACAGTCTTAATatatcattacattaaaatgaaaattaccaACAAAACATGCAGACTTCAGAACTACATATATTTTCccttaaattgtattgtagGCTTGATATATTTGTCA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159408 lncRNA upstream 304019 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 648969 8294518 ~ 8294873 (+) True G127096
TU159352 lncRNA upstream 654036 8288789 ~ 8289806 (+) True G127091
TU159286 lncRNA upstream 1298122 7629902 ~ 7645720 (+) False G127038
TU159484 lncRNA downstream 120543 9081327 ~ 9082881 (+) True G127206
TU159589 lncRNA downstream 402323 9363107 ~ 9377589 (+) True G127278
TU159869 lncRNA downstream 1482209 10442993 ~ 10444937 (+) True G127509
TU160196 lncRNA downstream 2710984 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 3133357 12094141 ~ 12096863 (+) True G127924
AMCG00000919 mRNA upstream 14575 8918752 ~ 8929267 (+) True AMCG00000919
AMCG00000912 mRNA upstream 62914 8869964 ~ 8880928 (+) True AMCG00000912
AMCG00000911 mRNA upstream 144221 8798586 ~ 8799621 (+) True AMCG00000911
AMCG00000913 mRNA upstream 291795 8646653 ~ 8652047 (+) True AMCG00000913
AMCG00000910 mRNA upstream 298645 8641674 ~ 8645197 (+) True AMCG00000910
AMCG00000924 mRNA downstream 71372 9032156 ~ 9033118 (+) True AMCG00000924
AMCG00000928 mRNA downstream 317410 9278194 ~ 9281019 (+) True AMCG00000928
AMCG00000927 mRNA downstream 333687 9294471 ~ 9358158 (+) True AMCG00000927
AMCG00000930 mRNA downstream 434834 9395618 ~ 9431056 (+) True AMCG00000930
AMCG00000929 mRNA downstream 493373 9454157 ~ 9456101 (+) True AMCG00000929
TU159397 other upstream 323647 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 7247595 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 7343203 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 8602071 339640 ~ 341771 (+) False G125561
TU159756 other downstream 1187073 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 3038880 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 6209127 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 6448328 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 9062276 18023060 ~ 18044251 (+) True G129365

Expression Profile