RNA id: AMCG00000928


Basic Information

Item Value
RNA id AMCG00000928
length 1497
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00000928
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9278194 ~ 9281019 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGAAGATCAGGTGACAACCATACATAAAGGTCTAGACCGCTGTGCGGCTTTATTACAAGGTATACTTCTAACTGAAAAATCAGATGCTCAGCCTGCAACCTCAAAACTAGGAAAAACGGTTGTAAAGTCCAAACCAAGAGTAACATTTGGCAAAGGTGAGAATGGGAAAAGAAAGCCACAGAGGAAGACGGGCCTAATCGGTCAAGCTCAGAAAGAAGCAGTTGCTGTAAAGAAGACTACTTTGCCTTCTAATTCCTGCCCTGGGATGAAAGAAGACGGATGTGTGAACTCTGTGGAGACTCCTGTTGCCCAGCCAGTGTTGGCCCCTTTTGCCCAGCACTTCTCTGAGGCTCAGCCAGCTCTGTGTAAGGATGTCCAAACACAGATGTCTCTGATGAGCTACCCAGTACCAGGAAAGGGGAGCCTCACACATCCAGgaTCAAAAAGTTCAACAGCATTTAACTGTCGCTTGACTACATCCACTCCAACATTGTCTCCTCAGAAATCTGGTAGTCAACATAACATTCAAACTAATCTGTCAAATGATGTGCATTGCCAAGCAGCTTTCCAAGGTGGGCATAGCTTTTTTCCATCACAAACGGGGCCTGTGACTACATCTCCTGCTGTGCTCATTGAAGATGTTGAACAGAGCGTGCCACAGCCTCGGTACAGCAAGGAAATGGGAGATTCAGGGCACACAAGCCATGAGTCCTTACAGGAGCAGGCAATGCTGAGACAGATCCAGGTACATCTTGCCCACCTGCAGCAAGAAACAAATACTCAGCAGATGGCAACGCAAGCTTTGAGTCAAGGTCTGCAACCCCTGTCCAATGAAGCAGCGGAGTACACTGAAGAAACCACAAGCGATGAGGAAGAAACTGACTCGGTGGATATTATGCCAGTGCGGGACACTGGCTGTCAGACAAGTTTTGACAGACAAAAGCTGTTCCTGAAGTCAAGAAAGATGAGCCCTGAACAGACTGCCAAGAAAGTCAAGACTGTGAAATACCTCCTAGGAGAACTAAAGACCCTCGTTGCTGATCAAGACGACTCTGAGATTCTCCGGCTGATCGCAGAAGTGGAGGACTGTGTCTCCTTGCTTCCAGCCATGGTGGGAAGTACAAATGTTCAGGCAGAAATCGCTCTGTCCCTGCAGCCTCTGAGAAGTGAGAACGCACAGTTGCGAAGACGCCTTAGGATTGTAAACCAGCAGCTGAGGGAGCGTGAACGAGCAGAGAAGGAGTCCAGACCTGTTGACTGCAACTTTGAGGTAATCTCCCTGCAGGCCATGATCATGACACTGCAGAGCCAGCTGAAGGAGTCCCACAGGAGTGCTGAAGCACTACAGAGGAAGAACGAAGAACTACTTCAGTCTTTCGCCGAACAGCAACGAGAAAATCTCCAGCTACGAAAAGCCATggaggacaaagagagagaattaCAGCAGAACCGACAGCGGAGTGAGGCGGACACAGCTAGGGTCAAAATGGGTAAA

Function

GO: NA

KEGG:

id description
K16541 CCDC14; coiled-coil domain-containing protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159484 lncRNA upstream 195313 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 638371 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 983321 8294518 ~ 8294873 (+) True G127096
TU159352 lncRNA upstream 988388 8288789 ~ 8289806 (+) True G127091
TU159286 lncRNA upstream 1632474 7629902 ~ 7645720 (+) False G127038
TU159589 lncRNA downstream 82088 9363107 ~ 9377589 (+) True G127278
TU159869 lncRNA downstream 1161974 10442993 ~ 10444937 (+) True G127509
TU160196 lncRNA downstream 2390749 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 2813122 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 3079896 12360915 ~ 12362152 (+) False AMCG00001022
AMCG00000924 mRNA upstream 245076 9032156 ~ 9033118 (+) True AMCG00000924
AMCG00000918 mRNA upstream 317410 8943842 ~ 8960784 (+) True AMCG00000918
AMCG00000919 mRNA upstream 348927 8918752 ~ 8929267 (+) True AMCG00000919
AMCG00000912 mRNA upstream 397266 8869964 ~ 8880928 (+) True AMCG00000912
AMCG00000911 mRNA upstream 478573 8798586 ~ 8799621 (+) True AMCG00000911
AMCG00000927 mRNA downstream 13452 9294471 ~ 9358158 (+) True AMCG00000927
AMCG00000930 mRNA downstream 114599 9395618 ~ 9431056 (+) True AMCG00000930
AMCG00000929 mRNA downstream 173138 9454157 ~ 9456101 (+) True AMCG00000929
AMCG00000935 mRNA downstream 237262 9518281 ~ 9553651 (+) True AMCG00000935
AMCG00000934 mRNA downstream 295042 9576061 ~ 9577701 (+) True AMCG00000934
TU159397 other upstream 657999 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 7581947 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 7677555 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 8936423 339640 ~ 341771 (+) False G125561
TU159756 other downstream 866838 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 2718645 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 5888892 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 6128093 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 8742041 18023060 ~ 18044251 (+) True G129365

Expression Profile