RNA id: AMCG00000934


Basic Information

Item Value
RNA id AMCG00000934
length 891
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00000934
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9576061 ~ 9577701 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtctgcactccGCAAGAAATTTGGGGACGACTATCAGGTAGTGACCACCTCGTCCAGCGGCTCTGGATTCACGCAGCCGGCGCCCAAGAGGAAGAGGCAGCGCTTCGTGGACAAGAACGGCCGCTGCAACGTCCAGCATGGCAACCTCGGGAGTGAGACCAGCAGATACCTCTCGGATTTATTTACCACCCTGGTAGATCTGAAATGGCGCTGgaatttatttatcttcatCCTGACTTATACTGTAGCCTGGCTGTTCATGGCATCCATGTGGTGGGTCATCGCCTACATCAGAGGCGACCTGACAGATAAAGCCCACGATAGTCAGTACACGCCGTGTGTGGCCAACGTCTATAACTTTCCCTCGGCTTTCCTGTTCTTTATTGAGACCGAGGCCACCATAGGCTATGGCTTTAGGTACATCACAGACAAGTGTCCCGAGGGgatcattttgtttctctttcagtcTATCCTGGGATCCATTGTAGATGCCTTTTTGATCGGCTGCATGTTTATCAAGATGTCTCAGCCCAAAAAGCGGGCAGAGACTTTGATGTTTAGTGAACATGCGGTGATCTCCATGAGGGATGGGAAACTGACCCTCATGTTCAGAGTCGGCAACCTGCGCAATAGCCATATGGTCTCCGCTCAGATCCGCTGCAAATTGCTGAAATCCCGGCAGACGCCTGAAGGCGAGTTTCTCCCACTGGATCAGCTCGAGTTGGATGTGGGCTTTAGCACCGGGGCAGACCAGCTTTTTCTCGTTTCCCCTCTTACAATTTGCCATGTGATCGACACCAAGAGCCCCTTCTACGACCTCTCGCAGAGATCCATGCAAACTGAACAGTTTGAAATTGTTGTCATTCTGGAGGGGATTGTGGAAACCACT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159589 lncRNA upstream 198472 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 493180 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 936238 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 1281188 8294518 ~ 8294873 (+) True G127096
TU159352 lncRNA upstream 1286255 8288789 ~ 8289806 (+) True G127091
TU159869 lncRNA downstream 865292 10442993 ~ 10444937 (+) True G127509
TU160196 lncRNA downstream 2094067 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 2516440 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 2783214 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 2783214 12360915 ~ 12362152 (+) False AMCG00001022
AMCG00000935 mRNA upstream 22410 9518281 ~ 9553651 (+) True AMCG00000935
AMCG00000929 mRNA upstream 119960 9454157 ~ 9456101 (+) True AMCG00000929
AMCG00000930 mRNA upstream 145005 9395618 ~ 9431056 (+) True AMCG00000930
AMCG00000927 mRNA upstream 217903 9294471 ~ 9358158 (+) True AMCG00000927
AMCG00000928 mRNA upstream 295042 9278194 ~ 9281019 (+) True AMCG00000928
AMCG00000936 mRNA downstream 38615 9616316 ~ 9616900 (+) True AMCG00000936
AMCG00000939 mRNA downstream 255659 9833360 ~ 9867598 (+) True AMCG00000939
AMCG00000938 mRNA downstream 360506 9938207 ~ 9945452 (+) True AMCG00000938
AMCG00000948 mRNA downstream 446587 10024288 ~ 10035708 (+) True AMCG00000948
AMCG00000946 mRNA downstream 458973 10036674 ~ 10041048 (+) True AMCG00000946
TU159397 other upstream 955866 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 7879814 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 7975422 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 9234290 339640 ~ 341771 (+) False G125561
TU159756 other downstream 570156 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 2421963 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 5592210 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 5831411 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 8445359 18023060 ~ 18044251 (+) True G129365

Expression Profile