RNA id: AMCG00000943


Basic Information

Item Value
RNA id AMCG00000943
length 1272
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00000943
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10056629 ~ 10076722 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTCACCCACCAGTTTTCCCAGCTCCGGACGCTATTGGGCACCGGCCAGGAAGACGGGAGTTCATTGGCCAGCTCTGCTGTCAAACGGACCAATTAGCACGAAAGATTTAGAAGCTATGAGTGGCAGAGACCTTCGTATGTTTATCACAAATCACAGAGCAGAAGATATAGAAAAGTTGACATTCAGAATGAAAGATGGCCTTGGAAGCAAAAAATACAGACCAGTTGATTATCAACAATTGCAGGCCATCACAGAAGCCAAAAGGCTCGCATCAGCAGGCATAGAACTGAAGATCCACAAAACCCTGCATGCCGCAAAGATGACCAAAGAAAATACGATTTTAAGACAGCATCGACAGGTTTGGTCCCAAGAACATGCAAGATTAATGAAGGCAGGGGATAGAGCGGAGTTAGAGTTACAAAGGTTCCTGGAGCAAAATGGATTAAATGATCATCTCTTATTAGAAATGAAAGACTATGAGCTAATCTTAACGGAGGACAGAGAATCATTCAGAGCTGCTACAGTGGACCCCGTCTGGCAACTAAAGGATGATTTACATTATAGACTGTGTGAAATGCGTTCATATAACTCCCAGCTCCCCCCAAAGTCCTTTCATTGTGACCTAATACTTGAGCAGGTGGAGTATGTAAAAGAACAGCAAAAAGACATTACAGAAAAACTTGAATCACAATGTCTATCTATGGAAGAGGAAATCAATGCCACTGCTAGAGAGgAATGGTTTTCTTCAGAGGAGGTTCCCAATGATTTACAGCAGATTCCAGAGGAAGTGTTATGTTTAGAGTGTCCTTATCCTGACCTTAAGGCTTCTCTGCTGAATGAATTCCAGGCCCTCGCTGAAAAATACACATCCAGGCTACAAAGCATCACACAAAGGCTTAGTGGAATGGACAGGTGTTGTGGATGGGACATGGCAGATCACTTTGTATTTCAGTTGATTGTGAACCAGTATCCACAGGACCTGAATGACAGGAGAGTTTTGTACATGGATATGTTGCGGAGGCTTCTACCTCACAGATCGAGACAAGACCTGagtGACCACGAGAGGTGCTGGGATTGGTACCGCTTCACCGTGGAGCAGAAGAAGGTCCTGGTGCGGTGCTGGCTCCGAGACAGGGCAGACCTCCTACTGAAAGCACGGCTGACCGTAGACGAGGCCTGCACGGCCTATGAAGAAGAGCTGGCCCTGCGGACTGACCAAAGACGACAACAGGAAATATGTGCAGAACTGAAAGATAAGGTACGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159669 lncRNA downstream 225939 9824796 ~ 9830690 (-) False G127346
TU159671 lncRNA downstream 225939 9824796 ~ 9830690 (-) True G127346
TU159659 lncRNA downstream 401986 9654330 ~ 9654643 (-) True G127337
TU159645 lncRNA downstream 499481 9550650 ~ 9557148 (-) True G127325
TU159616 lncRNA downstream 587753 9455971 ~ 9468876 (-) True G127300
TU159757 lncRNA upstream 71053 10147775 ~ 10150934 (-) True G127420
TU159830 lncRNA upstream 314582 10391304 ~ 10395926 (-) True G127478
TU159927 lncRNA upstream 488205 10564927 ~ 10566649 (-) True G127555
TU159952 lncRNA upstream 539208 10615930 ~ 10616227 (-) True G127573
TU160019 lncRNA upstream 681148 10757870 ~ 10759494 (-) True G127631
AMCG00000944 mRNA downstream 47801 9996356 ~ 10008828 (-) True AMCG00000944
AMCG00000945 mRNA downstream 68121 9987133 ~ 9988508 (-) True AMCG00000945
AMCG00000941 mRNA downstream 81864 9968147 ~ 9974765 (-) True AMCG00000941
AMCG00000942 mRNA downstream 95920 9955245 ~ 9960709 (-) True AMCG00000942
AMCG00000940 mRNA downstream 106633 9945571 ~ 9949996 (-) True AMCG00000940
AMCG00000951 mRNA upstream 201800 10278522 ~ 10294112 (-) True AMCG00000951
AMCG00000950 mRNA upstream 218859 10295581 ~ 10328082 (-) True AMCG00000950
AMCG00000953 mRNA upstream 320275 10396997 ~ 10399450 (-) True AMCG00000953
AMCG00000955 mRNA upstream 325279 10402001 ~ 10467919 (-) True AMCG00000955
AMCG00000954 mRNA upstream 392707 10469429 ~ 10476532 (-) True AMCG00000954
TU159607 other downstream 637304 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 2410907 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 3322812 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 4483602 5572705 ~ 5573027 (-) True G126700
TU158503 other downstream 5420113 4636096 ~ 4636516 (-) True G126427
TU159787 other upstream 197965 10274687 ~ 10278211 (-) True G127443
TU159975 other upstream 620985 10697707 ~ 10700348 (-) False AMCG00000960
TU160686 other upstream 2655462 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 3280261 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 4515977 14592699 ~ 14598570 (-) True G128628

Expression Profile