RNA id: AMCG00000949


Basic Information

Item Value
RNA id AMCG00000949
length 5293
RNA type mRNA
GC content 0.50
exon number 27
gene id AMCG00000949
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10100283 ~ 10154187 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGCATGCCAGCTCCTGAGCAGACCCCAGTGTCGGAGGAGGGGCTGCTGCTCGGCACCCGGGAGGGATCCTCCACCACAGGCATGGAGACGGACAGCACGGCAACCACCATCCTCGCCTCGGTCAAAGAGCAGGAGCTCCAGTTTGAACGGCTGACCAGGGAGCTGGAGGTGGAACGACAGATTGTTGCCAGTCAGCTGGAGAGATGCCGACTGGGGGCAGAGTCGCCTAGTGCTGCCAGCATCAGctcATCTGAGAAGTCCTTCCCCTGGAGATCAGAAGATGCCCCAACAGGAGCGACCAAGTCTCGGGTGACGGACCCCCCGCAATCCACATCCTACCGCGTCAGGAGTAAACAGGAGCAAGTTACCCTGTACTCGCCTGAACAGACCTCTCTGCATGAAAGGTCTGTTGGAAATTCCCGCAGCTCAACACAAATGAACTCGTACTCTGATAGCGGTTACCAGGAAACGAGCAGCTACTACAGCAGCCAGAATCTGGTGAAGCCAGAACTGCGATTGCAGCATTCGTTCCCAGGCACTGCCAGTAATTCTACTCTGATGAGAAACACGAAAGCAGAAGGACAGACCATAGTGCAGGCTCCGGTGAACATCGCGGCAGCGTCGGGGCGGGTGATGCGGAGGGTGAGCTCGGTGCCATCGCGTACCCAGTCCCCTGCCTACGGCAGCAGCATCTCGCCCTCCAGGGGCTCCTTAAGGACTTCCCTGGGCAGTGGATACGGCTCCCCAGCTGTCACTGAGCCCAAACCCCTCGCCAGCATATTTTCCACCACAACGCTTCCCTCCTCGCAAAGGCCCGGGTCCCCTTACAGCGCCCAGAAATCCAGCTCCCCGGCGGCTGTGCGCAGGGTCGGCTCCGTCAACTCCAAGCAGTCTGCCAACGCCACCCGGGGCACCTCTCCTTACCAAGTGCTGAGCAACCCCACCAGAATGGGCTCCCCGCTGACCCTGGTGGACCCACAGATGAGGCTGGGGTCCCCCTCCCACGCCCAGCAAaccagctcctcctcccccatccGCTCCGGCATGACGGCGGTCCCACAGCACTATGGCTCCACTCTGCAGAGAGCGTTGCACCACGACACCGATCTGTACGGGCAGTCGTATGACATCTATGACAGGATGATCCCGCCGCGGCCAGACAGCCTCACAGGATTAAGAAGCTCGTATGCCAGTCAGCACAGCCAGCTGGGACAAGATCTTCGGTCAGCCATGTCTCCAGATTTGCATATCACACCCATCTACGAGGGCAGGACGTTTGAGAGCCCTCTGTACCGCAGCCCCAACCATGGGGCAATTGAGCTGCATCATGGGACGCAGACTGCAGTGTACAGGGCTGGCTCAGGTGCAGGAAATCTACAAAGGACCTCCAGTCAACGCAGtgctatgacataccaaagaaGCAACTACGCCCTGAACTCAGCGGCTACCTATGCTGAGCCCTACCGCTCAGCTCAGTACAGACCCTCCGAGTCCAACTATGCCAGGCAGGCTGTCCCTGTTGATGACGGTACCACCAGATCCCCCTCCATAGACAGTATTCAAAAGGACCCCAGGGAATTTGCTTGGCGTGACCCAGAGCTGCCGGAGGTGATTCATATGCTACAACATCAATTTCCCTCGGTTCAAGCGAATGCAGCGGCTTACCTGCAACACCTGTGCTTTGGAGATAATAAAGTGAAAACTGAGgtgtGTCGGCTGGGGGGTATCAAACACTTGGTTGACCTTTTAGACCATAAAGTCTTAGAAGTTCAGAAAAATGCCTGTGGAGCACTAAGAAATCTTGTCTATGGAAAAGCAACAGATGAAAACAAGATCGCTGTGAGAAACGCCGGGGGAGTCCCTGCTTTACTGCGACTGTTGAGAAAGACGGTGGATGCTGAAGTGAGAGAGCTTGTCACTGGAGTTCTGTGGAACTTATCTTCTTGTGATGCAGTAAAAATGACAATCATTCGGGATGCCTTAAGTACTCTGACAAACACTGTGATAATCCCGCACTCTGGATGGAACAGCTCCTCCTTTGATGATGATCACAAACTGAAATTTCACTCTTCACTTGTGCTGCGAAACACCACGGGCTGCCTGAGGAATCTCAGCTCAGCAGGGGAGGAAGCACGGAAACAGATGCGGACGTGTGATGGGCTGGTGGACTCGCTGCTGTACGTCATCAAGGCCTGCGTGAACTCGTCGGACTTCGACAGCAAGTTGGAGATGCCTCAGTCTCGTCTCTTGGGAACCAATGAGTTGGACGGTTTGCTTGGAAATGAGTCCCCTAGTAAGGATGTGGATTCAAGTTgttgggggaagaaaaagaaaaagaaaaagaaatcgaCACAAGATGACCAGTGGGATGGTGTTGGCCCAATTCCTGGATTTTCAAAGCCTCCTAAAGGTGTTGAAATGCTGTGGCACCCGACGGTAGTGAAACCTTATCTCACTCTCCTCGCCGAGAGCTCCAACCCGGCCACACTCGAGGGATCGGCCGGGTCTCTTCAGAATCTCTCCGCGGGCAACTGGAAGTTCGCAGCATACATCCGCGCGGCTGTGAGGAAAGAGAAGGGTCTCCCTATCCTCGTGGAGCTGCTGAGGATGGACAACGACCGGGTGGTGTGTTCCGTCGCAACAGCCTTACGAAACATGGCTCTGGATGTACGAAACAAAGAACTGATCGGCAAATATGCCATGCGAGACTTGGTCAATCGTCTTCCAGGAGGCAACACCACGTTACTGTCCGACGACACCGTGGCAGCGATCTGCTGTACCCTGCATGAGGTCACAAGTAAAAACATGGAGAACGCCAAAGCCCTGGCAGACACTGGAGGGATTGAAAAATTAGTGAATATCACtaaaggaagaggagagagGTACTCAATGAAAGTTGTGAAAGCTGCAGCCCAGGTGCTGAGCACACTGTGGCAGTACAGAGACCTCCGCAGCATCTATAAGAAGGATGGATGGAACCAGAACCATTTCATCACCCCGGTGTCcacactagagagagagaggtacaaATCTCAACCCACCTTACCAACCAGTAACCTACAGATGTCCCCAGTCATCCAATCAGCTGGTAGTGCAACCTCTTCCCCTGCCTTGTTGGGAATAAAAGAACAAAGATCTGATTATCAAAGGACACAGCCATCTATGCAATTTTATAACTATCAAGGCGACAACAATGTACATAAAAATCAGTACACAGGGTCTGGGAAGCCATCTCCATTTTATATAGGCTCCTATTCTTCGCCACCAAGGGAGGAGTCAAGGAGGACACAGCATCAACAGCTGTACTATAGCCAAGATGATCCAAGCAGGAGGAACTACGACACCTACAGAATGTACCTGCAGTCGCCACACAGCTATGAGGACCCTTACTTTGAAGACCAGGTTCATTTTCCCTCTAGTGCGGAATATACTTCACAGCAGCACGGACTCAAATCTACAACAAACTATGTGGACTTCTACTCTACTACACGGCGGCCTTCCTATAGAGCAGAACAGTACCCTGGATCGCCAGACTCTTGGCGAGTCTTTGCGTGTCCAAGCCCCGCCCCCAAAGCAGCGCTGATTGAAGGGCACGAGCGGACCGAGAGAGAGCAGCCAACTTTCAGCATGGTGCAACTGTCGAAATGCGGACTGAAAACCAACCCGGCCCTAAGAGCTGGCCATCCCGCCGCAGTCTTGAGGACCAACTTTTCTGAAGAGCAGCGCACGCTGACTGTCCGCAGCCGAGGCTCTGCGCGCAGAGCAGACATTTGGCATTGCGATGCTCTGGTTAACACCCTGTCTCCCCTCATCGCAGTGAAGGCCGGAGGGAAGCGAGTGGCGAAGAAAGGCGGTGAGGAGAATGGCCCCCCCGAGAAGGAGGCCAGGAGACCTGCAGTGGACAAATTAAGGTCTGCTGCCATGGTTCCCAGAATGCAGTCGATCAGTATCCTCTTAGCCGGGACACTGGAAAAGTTGAGTCATGACTTTCCAGCTACGCCAGCAAGTGTTCGACATAACAAACCCAGACCTGCTGTTGAGAAGTTTCACACTCCAAAGATGATGTACTTCATTCAGCAGCCTCGCAAGTGTTGAAGCGAGAAGGCTGGtcttctgtctgtgtctgtgtaatgGGGGTGTAGCACTTTCTGTACTAGGCTTGTGACAGAAACGAGCATTGGGAAATCTCTTGGTGTGGGATAAtgggagatatatatatatttttttccctgtacAATAAAACTCTTAAATCAAGCTTGTTAAAATCTGAGGTCTTCCTATTTCTGCATACACTGTTGGAGTTTATGCATTCATCGATAAACCCTGTTTCACAATAAATGCAAGATCTTCAGTGTTGTGACAGTAAGTGTTCCCATCTGTTTCTGATGCTTAATAGGTTCTAAAGTCCAGCTTTAGCAGCTGTATAGTAAGTCAGGGTGGCAAGATGGTATTCAGAGGGACCAGTTCAACAGCAGTACGTCTGAATAATggaatatttcattttgatatAGTGAGAGGTGTGCAGTAGCTATTGCTTAATATAAgactttacaaaaatgttaagtTTCTTGCAGGAATCGCAACAATCAAAGGAAAGTAACAATTCCTATGTTTTGCATACAACAGTCCTGTAGTAAGTGTTTGTTGCGGCAGGCCTCCTCTCATCCATTGCACACATTCCAGGAATCCTGTCTACGTATTTTCATAATCTGTAGACTGtgcatcatttattttccagatatCTCAGATTAAACCTATTGGagtatttttctaaaatgtctGAGCAGTGTTATTGGCTTTTCTGTGAAAGCTTTAGAAAGATTTTTATTCTAGGAGTTTCAGGCACGGCCAGGGAAAAAGCTACAATAGCAAATCATTCTGCCATTATGACGATACTTTGCTTTTCAGAGTAAGTCTAGGAGAACTGAAATGTCTTTCTAAATCTATCGCACTAACATTACACTCTAGCAAGCTGGTgagaatgtttgttttgattacCTGCACTATCAATTTCCAGTGCAGATCAATGTGGtgctttataaaaatacattgtcattCTGCGATATAGTAAGCATGTTTTATGACCTTTCCTATAGTCCTCCCccatgtacaaaaaaataatgaataattacaaaTCTTGGCGCTTTTGGTGTGAAGTTTCAATGAATGGGTTGATATTATGTTCTGAATGTCTCTGTTGATAAAGCATTGATTATTGAAACCAATTGCTCAATGTCTTTTGAGTATTTTCTGTAAACCCCtcttatacaaaataataaaaaaattccAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159589 lncRNA upstream 722694 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 1017402 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 1460460 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 1805410 8294518 ~ 8294873 (+) True G127096
TU159352 lncRNA upstream 1810477 8288789 ~ 8289806 (+) True G127091
TU159869 lncRNA downstream 289770 10442993 ~ 10444937 (+) True G127509
TU160196 lncRNA downstream 1518545 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 1940918 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 2207692 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 2207692 12360915 ~ 12362152 (+) False AMCG00001022
AMCG00000946 mRNA upstream 59235 10036674 ~ 10041048 (+) True AMCG00000946
AMCG00000948 mRNA upstream 64575 10024288 ~ 10035708 (+) True AMCG00000948
AMCG00000938 mRNA upstream 154831 9938207 ~ 9945452 (+) True AMCG00000938
AMCG00000939 mRNA upstream 232685 9833360 ~ 9867598 (+) True AMCG00000939
AMCG00000936 mRNA upstream 483383 9616316 ~ 9616900 (+) True AMCG00000936
AMCG00000947 mRNA downstream 48434 10201657 ~ 10278211 (+) True AMCG00000947
AMCG00000952 mRNA downstream 228550 10381773 ~ 10391810 (+) True AMCG00000952
AMCG00000959 mRNA downstream 407333 10560556 ~ 10570905 (+) True AMCG00000959
AMCG00000957 mRNA downstream 426577 10579800 ~ 10603207 (+) True AMCG00000957
AMCG00000958 mRNA downstream 452445 10605668 ~ 10611409 (+) True AMCG00000958
TU159397 other upstream 1480088 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 8404036 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 8499644 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 9758512 339640 ~ 341771 (+) False G125561
TU160309 other downstream 1846441 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 5016688 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 5255889 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 7869837 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 8392670 18545893 ~ 18547915 (+) True G129453

Expression Profile