RNA id: TU159756


Basic Information

Item Value
RNA id TU159756
length 2602
RNA type TUCP
GC content 0.40
exon number 4
gene id AMCG00000949
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10100283 ~ 10154187 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCCCCGCCCCCAAAGCAGCGCTGATTGAAGGGCGTCCTGCGCTTCACCTGCGGCTGCAGACGAGCGGACCGAGAGAGAGCAGCCAACTTTCAGCATGGTGCAACTGTCGAAATGCGGACTGAAAACCAACCCGGCCCTAAGAGCTGGCCATCCCGCCGCAGTGAAGGCCGGAGGGAAGCGAGTGGCGAAGAAAGGCGGTGAGGAGAATGGCCCCCCCGAGAAGGAGGCCAGGAGACCTGCAGTGGACAAATTAAGGTCTGCTGCCATGGTTCCCAGAATGCAGTCGATCAGTATCCTCTTAGCCGGGACACTGGAAAAGTTGAGTCATGACTTTCCAGCTACGCCAGCAAGTGTTCGACATAACAAACCCAGACCTGCTGTTGAGAAGTTTCACACTCCAAAGATGATGTACTTCATTCAGCAGCCTCGCAAGTGTTGAAGCGAGAAGGCTGGtcttctgtctgtgtctgtgtaatgGGGGTGTAGCACTTTCTGTACTAGGCTTGTGACAGAAACGAGCATTGGGAAATCTCTTGGTGTGGGATAAtgggagatatatatatatttttttccctgtacAATAAAACTCTTAAATCAAGCTTGTTAAAATCTGAGGTCTTCCTATTTCTGCATACACTGTTGGAGTTTATGCATTCATCGATAAACCCTGTTTCACAATAAATGCAAGATCTTCAGTGTTGTGACAGTAAGTGTTCCCATCTGTTTCTGATGCTTAATAGGTTCTAAAGTCCAGCTTTAGCAGCTGTATAGTAAGTCAGGGTGGCAAGATGGTATTCAGAGGGACCAGTTCAACAGCAGTACGTCTGAATAATggaatatttcattttgatatAGTGAGAGGTGTGCAGTAGCTATTGCTTAATATAAgactttacaaaaatgttaagtTTCTTGCAGGAATCGCAACAATCAAAGGAAAGTAACAATTCCTATGTTTTGCATACAACAGTCCTGTAGTAAGTGTTTGTTGCGGCAGGCCTCCTCTCATCCATTGCACACATTCCAGGAATCCTGTCTACGTATTTTCATAATCTGTAGACTGtgcatcatttattttccagatatCTCAGATTAAACCTATTGGagtatttttctaaaatgtctGAGCAGTGTTATTGGCTTTTCTGTGAAAGCTTTAGAAAGATTTTTATTCTAGGAGTTTCAGGCACGGCCAGGGAAAAAGCTACAATAGCAAATCATTCTGCCATTATGACGATACTTTGCTTTTCAGAGTAAGTCTAGGAGAACTGAAATGTCTTTCTAAATCTATCGCACTAACATTACACTCTAGCAAGCTGGTgagaatgtttgttttgattacCTGCACTATCAATTTCCAGTGCAGATCAATGTGGtgctttataaaaatacattgtcattCTGCGATATAGTAAGCATGTTTTATGACCTTTCCTATAGTCCTCCCccatgtacaaaaaaataatgaataattacaaaTCTTGGCGCTTTTGGTGTGAAGTTTCAATGAATGGGTTGATATTATGTTCTGAATGTCTCTGTTGATAAAGCATTGATTATTGAAACCAATTGCTCAATGTCTTTTGAGTATTTTCTGTAAACCCCtcttatacaaaataataaaaaaattccAACTTAATCAccttttgtgttgtattttcttctgGACATTTGCTGAATGTTTGTGCTTTGTGTCAGCAAGGTAGTGCCAGGGGATTTCCCTGATTTACACAAAAGGCAGTGTGTGGCAAATCGAGGCTTCACTGTAACACATAAATTACCTTGAAAGCTTGAGAGCATGTCAGTTGTGAGATGAGACCTGGTGTTAACTaatgcttttattcatattcagTCTTAAACCACACATCAGATATATCCCTATATTTGAACTTTTGTCACGATCAGATTGTTCTCCACAATAATGATATGAATACTTTCTGGAAAATTGCTTAATCACATTGTAGGCTAAATATCTAATGCTGGATCAGCAATTAAAATGGAactttgaaacatttaatttttctctgCATTTCAAGTCCTTGTGGTGCAAGTGCATATATGACCACCAGATGGAGCTattgcagttttgcttttgtttgcaaaGCAGCCACCAGCAGACTTCAAAAGACAAACGCATATAAAACGATGTATTTTGAAACCTCTtactaatgcattattaaaaccTGAATTCCAAAGAAGAAACACATCACTGTGATAAACTTAATAACTACAATTTAAAGTCTATTACATCAATAGATGTATGTCCGAAGCAGAGACAATACAGTAGTATGTATGTAGTAGACAATAGTACTGCATTGCTCATTTGGTTCTGGAAACTGTCCTCTTCAGACTGCAAACTGTTCCATTGTTTGTAGTTTGTCTCGCACAGATTGtggcttcatattttaatattgacttGTTTAATTAATGCTCTGCCAGCCAACACCCACACGTTTTTGCCTattgtatgaatacatttgcactttgatttattttaatcatgccGTTGCTGTGGCGAAGCTTCCTTCCCTAAGACTGACATTTCTTACTGAACTACTGCCAGtgataaaactctgtgaaggtTTGTTCCCAGATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159589 lncRNA upstream 770268 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 1064976 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 1508034 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 1852984 8294518 ~ 8294873 (+) True G127096
TU159352 lncRNA upstream 1858051 8288789 ~ 8289806 (+) True G127091
TU159869 lncRNA downstream 288806 10442993 ~ 10444937 (+) True G127509
TU160196 lncRNA downstream 1517581 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 1939954 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 2206728 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 2206728 12360915 ~ 12362152 (+) False AMCG00001022
AMCG00000946 mRNA upstream 106809 10036674 ~ 10041048 (+) True AMCG00000946
AMCG00000948 mRNA upstream 112149 10024288 ~ 10035708 (+) True AMCG00000948
AMCG00000938 mRNA upstream 202405 9938207 ~ 9945452 (+) True AMCG00000938
AMCG00000939 mRNA upstream 280259 9833360 ~ 9867598 (+) True AMCG00000939
AMCG00000936 mRNA upstream 530957 9616316 ~ 9616900 (+) True AMCG00000936
AMCG00000947 mRNA downstream 47470 10201657 ~ 10278211 (+) True AMCG00000947
AMCG00000952 mRNA downstream 227586 10381773 ~ 10391810 (+) True AMCG00000952
AMCG00000959 mRNA downstream 406369 10560556 ~ 10570905 (+) True AMCG00000959
AMCG00000957 mRNA downstream 425613 10579800 ~ 10603207 (+) True AMCG00000957
AMCG00000958 mRNA downstream 451481 10605668 ~ 10611409 (+) True AMCG00000958
TU159397 other upstream 1527662 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 8451610 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 8547218 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 9806086 339640 ~ 341771 (+) False G125561
TU160309 other downstream 1845477 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 5015724 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 5254925 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 7868873 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 8391706 18545893 ~ 18547915 (+) True G129453

Expression Profile