RNA id: AMCG00000959


Basic Information

Item Value
RNA id AMCG00000959
length 2157
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00000959
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10560556 ~ 10570905 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAGTGTGCGCCGCTGGGGATTCCCCGTGGGAAGTTCCCAGTACATTAAAACAAGTCAAATGTTGGTACATTTTGGAGTGAAATATACTGTTTCCTTTCGCCTGACTGTCGAAAAAAGTTGGTCTTGAAGACTAACTCAATAACTGCAGTCTACTTGGTGGGACTTTTCGATGTAAGGTACTGTATCATTGATAAGATACGTTAAATAACTGCTTGTGTGTAACTTGACTGAGGcattatgtgttttatatacGTTTAAACATACCCCTTGTGTATGCTGAAGTGAATCTGATACTGCAGCTGTGTATATGGTTTTATCATATCTATGCTATTTTAAGAGTAAGCATTGTTATAAATCCTAATCCTAATCGTAATCATCATCCTAATCTTAATCTTAGTTGTTTTGGATGAGCACATGATCCAAGCGTTGTAATATATGTTACATTTGTTTAGAGCATAACGTGCAAAAAGGCCTACTGTAAGTTACACGTTCACATGTGacattgtatacattgtatttgtGGTCGATGCATTGTTATTTGAACTGCACTGTTGCACCTTTAGTGTAAATATACCGTCGTCTTTATAATCGTTgaaagtgatttttttgttgtttcttaccattttaatttgtattgcttaAAGGGATGTAACCTGATTCACTTTTGGACAAACCGATCGCCTGTGTGTTtcatttctgcttctgcttATCCATTACAAACATGGATAAGTGATCGAGTCACTGTGGAAGTCATTGTGAACACTGGACTAGGATGAAACTGATAGGATTTTAGTATCGATTATGGTGATGGAGGAAAGGGCTGGGGACTTTTGACAGGCACTCTTTTTACATGGTGTATTCCCATGTTTCAAATCCTGTATGTTGCACTATGTTCACGGTGTTTTTCCCCTTCGTGTTATTGAAAGAAATGATGGTACCGAGATTGAAGCATTAGTAATGGTACTAAAGAACGAGGTATGGAGAGGAAAATGGCAGACCAGCTCAACAAGGCTTTTGATGCCTACCGTCAAGCATCCATTGAGAAAGACAGTGTTAAAAAGGAGCTCCAGCAAAAGACCGATGCTTATGAGCAACATATCCATGAGCTCCACCAGCAGATACATGACCACAAACAGCTAATCGTACAACTTAAAACCCAGCTGAACATGGCAGGAAACTCCTCCAAAGGAATGGGGAAAGATTGTGAGCTTCCACTTGAATGCAAGGACGATGTCCTGCCCACTCTGAGAAAACATGAACCCGAGGCGCTGACACCATGTGATCTTCACGAGAACCCACGACTGAGAGAGAAACACTTAATGTTGaaggaaaacatgaaaactgCAGAGCTGGTAGTGGCACAAGCTGTACCCTTTTCATTACCTGGAATGACTGCTGAGGAAAGTAAAGAAGTTCTGGAGGCTTTTCAGGAGCTCCAGGGTAAATTCCTGGAGATTCGGTCTTtgacaaggaaacaaaaagatCATCTGAACAGATTATGTACAGGAGAGGGTAACGCAGCAGAGGaacCCGAGTTTTCCATGCCGATTCAGTGCACTGATATAACAGTTGAACAAGCAGAAGGACCTTTGACATCGGCCACAAAGTCCGACTCGGATAAAGAGTTATCCTCCGCCTCTATCACGTCCCGAGGAGTTAGCCCAGATGATGGGGATTACGAGAAGTCCTTTTCCAAACTGAGTATCAAGTTTCCACCAACAGACAGTGACTATGACTTCCTTAACAGTGCACCAGAAAGAAAAGATTTTGCACTAGGAACAAAAGACCATGTTTTCACTTCCAGCCTCCCAAAGGTGACTGTCAAACAGACTTTGGAATTTCCCACTGAATACACATTCACAGAAACTCAGACAGCTTCCCCATCAATCATGATGCACAAGGGTGTTCGGGGACCACAGCAGCCTGACTGGAGCCCTGAGGCCTGTGAAGACCAAGCCCAGGCAGCCTGTGCTGACCCTGAGCAGAATAAAAGTCCTGAAAATTGTGCCTTCTGTGATGCCATCCTTCCAGAAGGAACCTTTTATAGACATCTTAATTCACactttcaaaataaagcaaGTAATGGATTCTAATTAGTGGACACTTGGATACCTgaaagtttgttgttgttgttgtttttgttgttatatatat

Function

GO: NA

KEGG:

id description
K12650 TANK; TRAF family member-associated NF-kappa-B activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159869 lncRNA upstream 115619 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 1182967 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 1477675 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 1920733 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 2265683 8294518 ~ 8294873 (+) True G127096
TU160196 lncRNA downstream 1100863 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 1523236 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 1790010 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 1790010 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 1969176 12540081 ~ 12540318 (+) True G128074
AMCG00000952 mRNA upstream 168746 10381773 ~ 10391810 (+) True AMCG00000952
AMCG00000947 mRNA upstream 282345 10201657 ~ 10278211 (+) True AMCG00000947
AMCG00000949 mRNA upstream 407333 10100283 ~ 10153223 (+) True AMCG00000949
AMCG00000946 mRNA upstream 519508 10036674 ~ 10041048 (+) True AMCG00000946
AMCG00000948 mRNA upstream 524848 10024288 ~ 10035708 (+) True AMCG00000948
AMCG00000957 mRNA downstream 8895 10579800 ~ 10603207 (+) True AMCG00000957
AMCG00000958 mRNA downstream 34763 10605668 ~ 10611409 (+) True AMCG00000958
AMCG00000967 mRNA downstream 78707 10649612 ~ 10680286 (+) True AMCG00000967
AMCG00000966 mRNA downstream 182181 10753086 ~ 10759497 (+) True AMCG00000966
AMCG00000975 mRNA downstream 640856 11211761 ~ 11213039 (+) True AMCG00000975
TU159756 other upstream 406369 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 1940361 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 8864309 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 8959917 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 10218785 339640 ~ 341771 (+) False G125561
TU160309 other downstream 1428759 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 4599006 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 4838207 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 7452155 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 7974988 18545893 ~ 18547915 (+) True G129453

Expression Profile