RNA id: AMCG00000960


Basic Information

Item Value
RNA id AMCG00000960
length 1176
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00000960
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10696856 ~ 10700364 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGCTCAGAATAACTAAGCAATCACCAAGCATACCACCTGTCACACCGCGCACGGCTATATAAAGCTGAGCAGATGAAGGTCCACAAAACAGCTCTCGGGAGCAAGAAGAACTGATCCAAGGGAGAAGCAGTAGAGTCTTTCTTTGGAGAACGCCAACTGAAATACAGGACACACAATGAAAGGGATTCATTCTCTGGCTGGACTGCTGCTTTTGATTATTGTTCAAGGTAGCTGGCAAATCCCACTGCAGGACTCAGAAGAAAATTCAAGatTATTGACAGAAGACAATTCTATTGATGAACCCCGGGAACTTACAAACGTGAAGAGACATTCACAAGGGACCTTCACTAACGATTACAGTAAATATATGGATACCCGGCGAGCTCAAGACTTTGTTCAATGGTTAATGAGTACGAAACGGAGTGGtGGAGTTACAAGGCGCTATGCTGATGCTCCCTACATCAGCGATGTGTACTCCTACCTGCAAGACCAAGTTGCCAAGAAATGGCTGAAGAGTGGACAAGACAGAAGAGATTTTTCAGAGGAAACCAGTGATACAGACGTGAGACGACATGCAGACGGAAGCTTCACCAGCGATGTTAACAATGTTCTAGACAGCATTGCTGCTAAAGAATTCCTAAACTGGGTCATGACTGCTAAACCTTCAGATGCAAGccaAGGGAAtccatgaaagaaaaaagaaaaagaaatgtgctTCCTTGTTTGGTAATATATTTGGATCTGTAAGACACTGTTAGTCACAAATGGAAAACCTTCAAAAGATGTGTTCTACAAGACCCTGGATGTCATTTAAAGCCATACTGCTTTGCATGCAATGAAATGAGCACACTGTAATACTGTGCCACAATtctaaaagtaaataaatactgtcTAAAATTTATATGCTGTACAATTTAATATTAAGACCTCATCATCATGCTCTCTGCGAtgtatgaaatgcaaaatgcacTATTCATGAAACGATGCATCTGTAAAACTGACTTCGACTATAAATTAATAAGCAAAAGCACTAAATATTCCAGGTATAACAGGATACTGACAGGTAACTGTCAGTGTAAAATCTTAAGCCTCTTCATTCAAGTGttgtttcaaaatgcaaatgtaaagtTTTAAAGAACTAATGCCAGgcataaataaacttttttccctcata

Function

GO: NA

KEGG:

id description
K05259 GCG; glucagon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159952 lncRNA downstream 80629 10615930 ~ 10616227 (-) True G127573
TU159927 lncRNA downstream 130207 10564927 ~ 10566649 (-) True G127555
TU159830 lncRNA downstream 300930 10391304 ~ 10395926 (-) True G127478
TU159757 lncRNA downstream 545922 10147775 ~ 10150934 (-) True G127420
TU159669 lncRNA downstream 866166 9824796 ~ 9830690 (-) False G127346
TU160019 lncRNA upstream 57506 10757870 ~ 10759494 (-) True G127631
TU160081 lncRNA upstream 508177 11208541 ~ 11247944 (-) True G127678
TU160125 lncRNA upstream 696346 11396710 ~ 11407860 (-) True G127718
TU160154 lncRNA upstream 905440 11605804 ~ 11606176 (-) True G127740
TU160156 lncRNA upstream 908907 11609271 ~ 11609630 (-) True G127742
AMCG00000956 mRNA downstream 182599 10489430 ~ 10514257 (-) True AMCG00000956
AMCG00000954 mRNA downstream 220324 10469429 ~ 10476532 (-) True AMCG00000954
AMCG00000955 mRNA downstream 228937 10402001 ~ 10467919 (-) True AMCG00000955
AMCG00000953 mRNA downstream 297406 10396997 ~ 10399450 (-) True AMCG00000953
AMCG00000950 mRNA downstream 368774 10295581 ~ 10328082 (-) True AMCG00000950
AMCG00000961 mRNA upstream 2596 10702960 ~ 10723882 (-) True AMCG00000961
AMCG00000962 mRNA upstream 25485 10725849 ~ 10737276 (-) True AMCG00000962
AMCG00000963 mRNA upstream 48666 10749030 ~ 10752068 (-) True AMCG00000963
AMCG00000964 mRNA upstream 62606 10762970 ~ 10807821 (-) True AMCG00000964
AMCG00000965 mRNA upstream 139749 10840113 ~ 10841698 (-) True AMCG00000965
TU159787 other downstream 418645 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 1277531 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 3051134 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 3963039 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 5123829 5572705 ~ 5573027 (-) True G126700
TU160686 other upstream 2031820 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 2656619 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 3892335 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 4478877 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 4663703 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile