RNA id: TU159975


Basic Information

Item Value
RNA id TU159975
length 849
RNA type TUCP
GC content 0.39
exon number 4
gene id AMCG00000960
representative False

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10696856 ~ 10700364 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCAATCACCAAGCATACCACCTGTCACACCGCGCACGGCTATATAAAGCTGAGCAGATGAAGGTCCACAAAACAGCTCTCGGGAGCAAGAAGAACTGATCCAAGGGAGAAGCAGTAGAGTCTTTCTTTGGAGAACGCCAACTGAAATACAGGACACACAATGAAAGGGATTCATTCTCTGGCTGGACTGCTGCTTTTGATTATTGTTCAAGGTAGCTGGCAAATCCCACTGCAGGACTCAGAAGAAAATTCAAGatTATTGACAGAAGACAATTCTATTGATGAACCCCGGGAACTTACAAACGTGAAGAGACATTCACAAGGGACCTTCACTAACGATTACAGTAAATATATGGATACCCGGCGAGCTCAAGACTTTGTTCAATGGTTAATGAGTACGAAACGGAGTGGtGGAGTTACAAGGCGCTATGCTGATGCTCCCTACATCAGCGATGTGTACTCCTACCTGCAAGACCAAGTTGCCAAGAAATGGCTGAAGAGTGGACAAGACAGAAGAGAGTAGGGTTTTGTTCTATTAAGCATCTTACATTGTGCctagaggaagaaaaaataataataaaccaatgtataattaaattgtattataacatATGTTTTGTATGACCTGTATTGTTATTTCTCTGGTCGTGCAAATAAATTGACTGAACCGAAGCTTTGGGTTTATTGATATTGCAAAATGTCTTGTATTTTTCACTATtggttttattatgaattaCTTTTTATCCACACAATGCATTACACAAAGCCACAATTCAGATATGACTAGAtcaagcaaaatgtaaaatagccATGACTTTCTTTACTTACATTATACATATGACATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159952 lncRNA downstream 81480 10615930 ~ 10616227 (-) True G127573
TU159927 lncRNA downstream 131058 10564927 ~ 10566649 (-) True G127555
TU159830 lncRNA downstream 301781 10391304 ~ 10395926 (-) True G127478
TU159757 lncRNA downstream 546773 10147775 ~ 10150934 (-) True G127420
TU159669 lncRNA downstream 867017 9824796 ~ 9830690 (-) False G127346
TU160019 lncRNA upstream 57522 10757870 ~ 10759494 (-) True G127631
TU160081 lncRNA upstream 508193 11208541 ~ 11247944 (-) True G127678
TU160125 lncRNA upstream 696362 11396710 ~ 11407860 (-) True G127718
TU160154 lncRNA upstream 905456 11605804 ~ 11606176 (-) True G127740
TU160156 lncRNA upstream 908923 11609271 ~ 11609630 (-) True G127742
AMCG00000956 mRNA downstream 183450 10489430 ~ 10514257 (-) True AMCG00000956
AMCG00000954 mRNA downstream 221175 10469429 ~ 10476532 (-) True AMCG00000954
AMCG00000955 mRNA downstream 229788 10402001 ~ 10467919 (-) True AMCG00000955
AMCG00000953 mRNA downstream 298257 10396997 ~ 10399450 (-) True AMCG00000953
AMCG00000950 mRNA downstream 369625 10295581 ~ 10328082 (-) True AMCG00000950
AMCG00000961 mRNA upstream 2612 10702960 ~ 10723882 (-) True AMCG00000961
AMCG00000962 mRNA upstream 25501 10725849 ~ 10737276 (-) True AMCG00000962
AMCG00000963 mRNA upstream 48682 10749030 ~ 10752068 (-) True AMCG00000963
AMCG00000964 mRNA upstream 62622 10762970 ~ 10807821 (-) True AMCG00000964
AMCG00000965 mRNA upstream 139765 10840113 ~ 10841698 (-) True AMCG00000965
TU159787 other downstream 419496 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 1278382 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 3051985 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 3963890 6711958 ~ 6733817 (-) False AMCG00000888
TU158856 other downstream 5124680 5572705 ~ 5573027 (-) True G126700
TU160686 other upstream 2031836 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 2656635 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 3892351 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 4478893 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 4663719 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile