RNA id: AMCG00000968


Basic Information

Item Value
RNA id AMCG00000968
length 2244
RNA type mRNA
GC content 0.49
exon number 1
gene id AMCG00000968
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10931552 ~ 10933795 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGTGGACCCCAGAGCATGCACAGTGGGCAGAACAGCACTTTGACATCACCTCAACTACCCGCTCTCCAGCACACAAAGCAGAGGCATACCGGGGCCATTTACAACGTACCTATCAGTACGCCTGGGCCAACGATGACATTTCTGCACTGACTGCCTCAAACctgttgaaaaaatatgcaGAGAAGTACTCTGGAATTTTAGAAGGTCCCAACGAAAGGGCACTACTAAGTTCTTACTCTGACGGTGCTCCGGGTCTTTTGAACGGAAGGAAGATTGAAAACGATTCCTGGCAGCCTTCTATAAACTCAGACGGGGTTTATCCTATGAACTGTGTTCCAGATGTTATTTCTGCAAGTAAAGCTGGAGTGACAACTGCCCTACCTACAGCAGATGTCTCTGCCAGCATTGGCAGTTCTCCAGGGGTAGCCAGCAATTTGACGGAGCCCAGTTATTCCAACAGCAACTGCGGAAGTCACACAGTAGCCAGTCTTCATTCGGGACTCCCGTCTCAGGAATATGCCACTGGTTACAACGGCTCTTATCTGCATTCCAGTTATAGTGGGCAGTCAGCACCTGCCCTTCCTTCGCCTCATCCGTCACCTTTGCACAGCTCTGGACTTTTGCAGCCACCgcctccaccccctccccctacTCTGGTACCAGGCTACAACACTGGGTCTCCCAACCTATCCAGCTACAATTACCCATCTACTGGCTATCCTCCACAAACTGCTGTTGCCCCCGGTTATAGCCCTGGGGGGGCACCCCCTCCTTCTGCTTATTTACCATCGGGCATCCCGGCACCtacacccctccctccctccactgTCCCGGGTTACACCTATCAGTCCCATAACCTTGCACCAATTGCACCCACCCCTCTGAACAGCAGTTCAGCCAATTctctgaaaagaaaagctttcTATATGACAGGGCAAGCAGAAATGGACTCCAGTTATGGAAATTTCAGCTACAGCCAACAGCGCTCTTCTCAGAGCCCTATGTATAGAATGCCAGACAACAGCATTTCAAACACAAGCAGAGGGAATGGATTTGACAGAAATGCTGAGACGTCATCTTTAGCATTTAAGCCTACGAAGCAGCTGATGTCCTCTGAGCAGCAAAGAAAATTTAGCAGTCAGTCTAGCAGGGCGCTAACCCCTCCATCCTATAGTTCTGCAAAAAGCTCCTTGGGAGGTTCACGATCAAGTGAGCCATTTGGGAAATTCTCGTCTCCTGTAATGAGTGAGCATAGTGATGAGCACAGACAGCATCTTTCCCACCCAATGCCTGGATCGGGAATTGGCACAGCTACCTCATCCACCCGTCCTGCTGAAGAACAACTGAAGAACACTGACCCACACCTTGTGGAACTTGTGACCAATGAGATCATCAACCAGGGACCTCCCGTGGACTGGAGTGATATTGCTGGTCTGGATCTGGCCAAAGCTACAATAAAAGAGGAGGTTTTATGGCCTATGCTGAGGCCCGATGTGTTCAGCGGAGTCTCTGCGTTACCTCGGAGCATTCTTTTATTTGGACCTCAGGGAACAGGCAGAATGTTATTGGGCAGGTGCATAGCCAGTCAGCTGGGGGCTGCGTTTTTTAGGATCAGCGGCTCTGCCTTGGTGACAAAGTGGCtaggagaaggagagaaggtTGTCCATGCCTCTTTTCTGGTAGCACGATGTCGTCAGCCTTCTGTGATTTTCATCAGTGAGATTGACATGCTGCTTTCATCACAGCTGAGCGAGGAGAGCCcaataaacagaattaaaactgAACTCCTCATGCAGTTAGACAGTATTCTGACCTCTGCCGAGGACCAAATTGTAGTCATCTGCTCCACAAGTAAACCTGAGGAAATAGATGAGTCGATGAGAAGATACTTCATGAAACGACTTCTCATCCCATTACCTGACAGCACAGCAAGGCACCAGATAATCATTCAACTGCTCTCACAGCACAACTATTGCCTCAACGACAAAGAGGTTGCACTGCTCGTTCAGCGGACGGAAGGCTTCTCCGGACTTGATGTTGCCAGATTGTGTCAAGAAGCGATGGTTGGCCCTCTCCATGCCATGCAGGGCACTGACCTTTCAGCCATTATGCCTAGCCAGTTGAGGCCAGTCACTTATCAagactttgaaaatgttttttgcaaAATTCAGCCTAGTATATCACAGAAAGAACTTGACACATACACTGAATGGAACAAAATGTTTGGTTGTAGCCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160019 lncRNA downstream 172058 10757870 ~ 10759494 (-) True G127631
TU159952 lncRNA downstream 315325 10615930 ~ 10616227 (-) True G127573
TU159927 lncRNA downstream 364903 10564927 ~ 10566649 (-) True G127555
TU159830 lncRNA downstream 535626 10391304 ~ 10395926 (-) True G127478
TU159757 lncRNA downstream 780618 10147775 ~ 10150934 (-) True G127420
TU160081 lncRNA upstream 274746 11208541 ~ 11247944 (-) True G127678
TU160125 lncRNA upstream 462915 11396710 ~ 11407860 (-) True G127718
TU160154 lncRNA upstream 672009 11605804 ~ 11606176 (-) True G127740
TU160156 lncRNA upstream 675476 11609271 ~ 11609630 (-) True G127742
TU160157 lncRNA upstream 676448 11610243 ~ 11611612 (-) True G127743
AMCG00000965 mRNA downstream 89854 10840113 ~ 10841698 (-) True AMCG00000965
AMCG00000964 mRNA downstream 123731 10762970 ~ 10807821 (-) True AMCG00000964
AMCG00000963 mRNA downstream 179484 10749030 ~ 10752068 (-) True AMCG00000963
AMCG00000962 mRNA downstream 194276 10725849 ~ 10737276 (-) True AMCG00000962
AMCG00000961 mRNA downstream 207670 10702960 ~ 10723882 (-) True AMCG00000961
AMCG00000970 mRNA upstream 143317 11077112 ~ 11100449 (-) True AMCG00000970
AMCG00000969 mRNA upstream 201929 11135724 ~ 11155356 (-) True AMCG00000969
AMCG00000971 mRNA upstream 248137 11181932 ~ 11190201 (-) True AMCG00000971
AMCG00000977 mRNA upstream 368532 11302327 ~ 11310013 (-) True AMCG00000977
AMCG00000978 mRNA upstream 584716 11518511 ~ 11521717 (-) True AMCG00000978
TU159975 other downstream 231204 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 653341 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 1512227 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 3285830 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 4197735 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 1798389 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 2423188 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 3658904 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 4245446 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 4430272 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile