RNA id: AMCG00000969


Basic Information

Item Value
RNA id AMCG00000969
length 3239
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00000969
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11135724 ~ 11155356 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttttctccctgGTAGAAGAACCAAAGGGAaagctcctcttcctccttcacCCATAACAAAGTCTTTTGATGGTTCAAGATTTTCACCGACCAGGGAACATCCAAACGTAGCCATGGATCAGAAGGAGAACTTGATTGACAAAGACATCTCTCTGACAGTGGTCCTGCCAGGGGGTACAGAGAAGACTGCGACTGTGCATGGGAGCAAGCCAATGATGGACTTATTAATTATGCTGTGTGGGAAATATCATCTGAATCCATCGAGCCACACCATTGAGCTGGTCTCAACCAACAGAAACCAAATCAAGTTTAAACCAAACGCTTTAATAGGAGCGCTGGATGCAGAAAAGATTATATTAAAACCCAAAGGCGGTGatgaaaggaacaaaaaggCTGCACCTCAAATGCCTGAGGCTACAGTCCGTCTTGTAATAAACTATAAAAAGACTCAGAAAACAATTTTAAGAGTTAACCCTCGGGTTCCCCTTGAAGAGTTGATTCCTGCAGTTagtgaaaaatgtgaatttgatCCCAAGAGCACAGTGTTACTGAAAGATGTACACTCACAGGACCCACTGGACTTGTCAAAATCTCTCAACGATCATGGTATAAGAGAAGTGTATGCAAGGGACACTAAAGaAGATAAAAGTTCACCAACTAAAGATAAAACACTGaaggacaaagaaaacaaaggccTTTTCAGTATATTCAGAAGAAGTAAGAAGAAATCTGAAcaggCTACAACTGTAAGCGCTCCAGCATCACCAACCTTAAGCCAACAGAGACCTGGGAGCATGTGCTCCCTAAGTGCCAATGCCACTACTTACAGTTCAAACACACTGCCATCTGAGATGCCAAAGAAAAGGCGGGCCCCCCTGCCTCCAATGGTTGTGTCACAGAGTTTCCCAACCAACCTGAGTGAAGGTCAGACTGACCCTCAGCCAGATGCGCTTCCTGAAAGTGATCAGGATTTACCAGGGCTTACCAGAGGGTCATCCTCAGAATCATCCTTGAAAAGAACCAAAAGGAAAGCCCCAGCCCCCCCGTCCTCACCATGTAAAATCACACAAGATGAGACGGAACAGGACAGTAACATTAAAGCTGGGCTAGTCACGCAGTGTACCCTTGAAGGAATAACTGAAAAAGAAGAGATGGCTGTCTCAGCCACACAGGATGCCACTATTGCTGCGGCAACCCAAGAGGGAGAGCAGAGCCCCCCCATGTCCGCTGATATACCGGCAGACCCTGGCAACACTGAGCCCAATTTATTGCCTGTTGACGTCGAGATGAAGAGTGTATCTAATGGCACAAAGGAAGATGAATTGAATGATGTGTCCACAGATGGCAAGCAAGCTGTTGACCTTATAAATAAGGAGGAGTGCAGCCAACAAACACTGAAAGTCACTGAGGATTGTGTTACTGCTGATTTGGATCACACAGAAAAGGGTGATTTGAGACCTGCTGAACAAATGAAAGTGCAAGAAAGGACATCAGGTGACAAGGTTGTATCATTAGATGGAGGCAAGAAGGAATGCAACGCTGAAGTGTCTGTAGCTCTGCAAAGTGCACCTGTGAACTCGACTAGTTCTCAGACCCCAAAGGTTAAGCCTGTAATGCAGGATGCAGCTATACAGGCATCAGATTTAATTAACATGGGATGCACTGTCAAGGAAGAGAGTGATAAAGTGGAAACTGAAGGGGACTACAGTGCAATGAATTCACAAGGTGGAGATCTTCAGGGCCAAAATGCAATTAAAGCACATCTGGAATCTTCAGTAGAAAATCAAGATGCATCTGCTTTAGCTGAACTCTCTTCAAGTGAACAAGGTGTGCTAAAAAAGGACATGGCAACATCCACCGAGGAATTGGACTCGAGAGAAAGTGAAAATACATTACCTCAGGCATTAGAAGTGTCCTCTGAATTCCAAGATACACTTGCAACACAGACCCCTCTGATTTACAAGAAGGACTGTGAGCCTAAACCAAAGCCTTCTAATGAGGTCACAAGAGATTATATACCAAAGGTAGGACTGACAACTTACAAAATTGTGCCTCAGAAGTCTTTGGAGAAGCTCAAGTTCTTTGAGGTCCAGTTAACTTTGGAGGTGCCAGATGGGACCGTGGATCAGGAGGCATCCTATAAATCACCTGAGCATTTAGACATTCGCTTACATACCAAAGTGCCACAAGACTCAGTGGTTCAGCGATCTGCTGACTCAGATGAAATCCATCCTTATGAATCCAGTAGTGTTTCTGGAGTGAACAACACGACTGCTAACAGCAATCACACTGCCAGTAATAACATCGCGCCAGTTCTGTCCCCTCATTCAAGTGTAATTTCTGAAGGAGCATCAAAAGAAACCAAGCCTTTTTCTCTGTCTGATGTGGGCAGACTGCCATCTTTAACATCACCTTTAAGAGAAAAGAAAGTTCCACCTGCAACTAAACCTAAACCTGGATCTTTCCGCTTGCCCCAGCATAAAAGAACAGCTGGGGATTATGTAACTTCAGCAGCTTTTAGAAGTGGGAGTACAAGTTCTGTCTCTAGTCAAAGTGAGATTTCTGGGAGCCCTGGAAAAGAGCAAGAAATACGGTCTGAAAAGCTTTTTGAAGACGAAGAAGAAAACGTTtttcctccacctcctccaccagTAATGTTTGAAGAAACATCAGAAGGAAGAATCCGGGAACAGGGAAAGCCTGGCAGTCAGACAGCAGACATCCCGGGGATGGCCACTAAGTTTTCAAGGCAAATGAGTCTTCCAAATAAACAACCTGCAGGATTAAGTTTTGAAAAATTCAGAAGTTTTGCTGCTCCAAAACCTTATACCTCTACAGCCCCATCCCCCTTTGCTCTTGCTGTGTCTTCAGCAGTTAAGCGATCTCATTCATTCAGTCGAGGGTCTACAGGTCATGGTCTCCCTTCTCGAGGATTGCCTACTTCATCTTTTTCTGAAAGGTTCGCTACTAAGGAGCTGAAGGAACCTGCACAACCTTTAGTGGAATCTTCGGTTCCTGGTGCTTCAGATGCAATGTCTGTAAATGGAAGCTCAACAGGGCTTCTGCCTTCAAAAACAGAGTAAATGTGCGTGTAATTATTTGATGGATTACTTTCACCTCATGCTTTCTTAAAGACCTTGGATCAGAAGGTACTCTAGCATTCAACAAAACTTACATGAAAATGAGTGGATGGACTTTAGCTTCCAGTggagtgactttttttttttttttccctatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160019 lncRNA downstream 376230 10757870 ~ 10759494 (-) True G127631
TU159952 lncRNA downstream 519497 10615930 ~ 10616227 (-) True G127573
TU159927 lncRNA downstream 569075 10564927 ~ 10566649 (-) True G127555
TU159830 lncRNA downstream 739798 10391304 ~ 10395926 (-) True G127478
TU159757 lncRNA downstream 984790 10147775 ~ 10150934 (-) True G127420
TU160081 lncRNA upstream 53185 11208541 ~ 11247944 (-) True G127678
TU160125 lncRNA upstream 241354 11396710 ~ 11407860 (-) True G127718
TU160154 lncRNA upstream 450448 11605804 ~ 11606176 (-) True G127740
TU160156 lncRNA upstream 453915 11609271 ~ 11609630 (-) True G127742
TU160157 lncRNA upstream 454887 11610243 ~ 11611612 (-) True G127743
AMCG00000970 mRNA downstream 35275 11077112 ~ 11100449 (-) True AMCG00000970
AMCG00000968 mRNA downstream 201929 10931552 ~ 10933795 (-) True AMCG00000968
AMCG00000965 mRNA downstream 294026 10840113 ~ 10841698 (-) True AMCG00000965
AMCG00000964 mRNA downstream 327903 10762970 ~ 10807821 (-) True AMCG00000964
AMCG00000963 mRNA downstream 383656 10749030 ~ 10752068 (-) True AMCG00000963
AMCG00000971 mRNA upstream 26576 11181932 ~ 11190201 (-) True AMCG00000971
AMCG00000977 mRNA upstream 146971 11302327 ~ 11310013 (-) True AMCG00000977
AMCG00000978 mRNA upstream 363155 11518511 ~ 11521717 (-) True AMCG00000978
AMCG00000979 mRNA upstream 383129 11538485 ~ 11556121 (-) True AMCG00000979
AMCG00000988 mRNA upstream 456547 11611903 ~ 11614988 (-) True AMCG00000988
TU159975 other downstream 435376 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 857513 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 1716399 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 3490002 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 4401907 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 1576828 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 2201627 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 3437343 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 4023885 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 4208711 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile