RNA id: AMCG00000973


Basic Information

Item Value
RNA id AMCG00000973
length 4557
RNA type mRNA
GC content 0.42
exon number 28
gene id AMCG00000973
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11259400 ~ 11283681 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAGGCCTGTCGCTCCCAACTCCATTCCTGCATCAGATCCATTACTTCTTCCTGGACACCTCACGGAAATGGCGGCCCGTTGTTAAGTAACCCAGACGCTGTGGACCCAGTATCAAGATGGCGAAAATCAAGTAAAATGTAGCGAATTCAGCCTCGAAACACAACGTAACGAATTGTGAACCGTGTGCAGGTCATTTAGTGTCAGCCGAGCCGCTGCAATGGCAGGGACAGCAGACGACGAGTTAATGCTGgcTTTAATCAACTATTACTGCCAGGAAAAGTATTTCAATCATGTGCAGAATGCTGCAAACGAGGCTCTGAAAAAGAACAGCAGCGATCCCATCTTCATGTTTTTTCATGCCTATGGAGTATTAATGGAAGACAGAATCCAGGAAGCCATTCGAGAGTTCGAAGCTATTAAAGAAAGACGCGAGGTGTCTCTGTGCACGTTGATGGCTCTTATTTATGCCCATAAGAAGAGTCAAAATCCAGATCGAGATGCCATTCAGGAGCTGGATGCCAAGCTGAAGGAGCATCGCAAGAGTGCCACTCAGAAAGGGCTGTATTTTGCAGGACTGTTCCTCTGGCATCTGGGGCGCAATGAAAAAGCCAGAGAATACACTGACAGGATGATAAAGATCTCTAATGGTGCAAAAGAAggGCTGATCTTGAAGGGATGGATAGACGTTACATCTAATAAAGATGCCAGTGTTAAAAAGGCGGGGAAATATTTTGATGAAGCTTTAAAGGAAGGAGCAGATGTTTTTGCTTTGATGGGGAAGGCACAATACTTCGAGCTGCGACAAAACTACTCTGGAGCTTTAGAAACGATCAATCAAATCATTGTCAGCTTCCCTGAATTCCTGCCTgcttttataaagaaaatgaagctACTACTAACCTTGCAAGACTGGGAGCAGACTGTTGAAGCAGCTCAGAGGCTTTTACAAAAGGACAAAACTAACATTGAAGCTCTTCGGATGCTGGCTCTCCATTCATTGTGCAGAGAAGGAGATTTGAATGAGtCTTTCAACCAGCTCACCAACCTCTTTGCCACCCTGGACCGTTATGAGCCACACAATCCTGATCTTTTCTATCAGATGTCATTGGCTTTTACACGCGTGtGTGGAAGAAACGAGAAGATCCTTGAAAAGACACACACTTTGGTGGAGCGAGCATTTTCCATGGCATCAGGTGATGCAGAGCGAGCCACTGAGCTGGGCTATCAGCTCGTTCTGCAGGGGAAAATAAAGGAGGCGATGAAGTGGTACAGAACAGCAATGACACTGGATGAGACCAGCATCTCTGCTCTAACTGGAATGATTAGGTGCCAGCTTATTGAGGGACACCTGGAAGATGCAGAGCAACAGCTTGAATTTCTTACTGAAATCCAGCAAACTATTGGGAAATCTGGGGAGTTGTCTTACCTGCGAGCAGTTTTAGCGATTAAGAAGTGCAAGCCACAGGAGGAGGTCATTAACCTGCTCAATGATGCTATGGACACACATTTCTCTGCTCTGCAAGGACTGCCACTTGGGGTTGAATACTTTGAGAAGCTCAACCCGGACTTCCTGCTTGAGATCATTAAGGAATACATTGCTCTCTGTCCAACACAGCCACCTTCTCAAGGCCAGCCTGCCTCTCCCCAGCTGAAGCACTGCGCCTCAGTACTGGAGACAGTGGTCAAGACTGTGCCTGGGCTCATCCAAGCTGTTTATTTAATGGCTAAAGTAAAATTCCAAGCAGGCGACATCAAAGCGGCTCAGAGCAGCCTGCAACACTGTTTAGAACAGAATCCATCCCATGCTGATGCTCATCTCTTAATGGCCCAGATTTATCTTTTACAAGGAAATTTGAAACTGTCTTCACAATCTCTGGAGCTCTGCCTAAGCTATAATTTTGAGATACGAGAGCATCCTCTATACCACTTGATTAAAGCACAGActcaaaagaaaacaggagagcTGCAAGAAGCCATTCACACCCTGCAGATAGCAATGAGTTTACAAGGAATGAAAAGGACTGGGAGTTCTTCAAAATCCAAAAGTAAAAGAATCGAGATCAGCTCTACTGACTGTGTCTCCCATGAAGCAGCTAAAGTGATGCAGGATGCAATCAATGAATTCTCAGGGACCCCTGAAGAATTGCGTGTCACTATTGCAAACGCAGACCTGGCTCTTCTCCGAGGGGACACAGAACTGGCCCTTAACATGCTTCGCAACATCACACCAGAGCAGCCGTACTATATTCAAGCCAAGGAAAAAATGGCTGACATTTATCTAAACCACAGAAAGGAAAAGCGCCTCTATGCCAGTTGTTACAGagacTTGGTGGAGAAACTGCCTAGCTCCCATACCTATCTCTTGTTGGGTGATGCCTATATGAACATCCAGGAGCCAGAAAAAGCGATTGAAATATATGAACAAGCATTAATGAAAAACCCAAAAGATGGTGCCCTGGCCAGCAAGATTGGTAAAGCCCTTGTGAAAACTCATAACTATGCTAAGGCAATAAATTATTATGAAGCAGCACTCAAGAGCGGTCAGCAGAATTTCCTTCGTTACGACTTGGCAGAGCTTTTGCTTAAACTCAGGCAGTATGAGAAATCGGAGAGGGTTTTACAGCAGGCACTGAACCATGAGCCTGTCACTGACCTCGCAGCACTAAGTGAAGATGGTCGCTATCTAGTTCTTTTAGCTAAGATACAAAACAGGATGGAAAACAATGAGCAGGTGATACTATCCTTACAGAGAAAACAACTAGCAGCAGAGATCTGCGCTGAGATTGCCAAGCATTACACTTGTCAAAGGGACTATGAGAAAGCCATCAAATTCTACAAAGAGGCACTTGTTTATTGTGAGAGCGATAACAAGGTGATGTTGGAGCTTGCACGGCTATACCTTTCTCAAGATGATGTAGAGGCATGCCAGCATCAGTGTGCAGTTCTCCTTAAAACTGACCAAGATAATGAAGCTGCAACTATGATGATGGCAGATCTGATGTTTAGGAAGCAAGATTATGAGCAAGCCGTTTTCCACTTCCAACAACTTCTAGAGCGAAAACCAGACAACTACCCCACACTGTCACGTTTAATTGACTTGCTAAGGAGAGCAGGAAAGTTGGAAGAAGTTCCCAGATTTCTAGAGATGGCTGAAAAGCATTCTTCAAGAGCCAAGCTAGAACCTGGATTTAACTACTGCAAAGGAATTTATCAGTGGTACACAGGGGAACCAAATGATGGATTACGTCATTTTAACAAAGCTAGGAAGGACAACGAGTGGGGtcaaaatgcaatttacaacATGATTGAAATTTGCTTGAATCCCGACAATGACACGATGGGGGGTGAAGTGTTTGAAAACTTAGATGGAGACATTGGCAACTCTACAGAAAAACAGGAATCTGAACAACTGGCTGTGAGAACAGCAGAGAAACTTCTAAAAGAACTAAAACCACAGACCCCCGATGGGCATGTTCAGTTACGAATCATGGAGAACTACTGCCTCATGGCAACCAAGCAAAAAGCAAATGTAGAAAAAGCACTGAACGTTTTTACTGAGATTGCAAACAGTGAGAAAGATCATGTCCCTGCATTGCTTGGTATGGCAACAGCTTATATGATTCTCAAACAGACCCCAAGAGCACGGAACCAGCTCAAACGCATTGCTAAAATGAACTGGAATGCCATTGATGCCGATGAGTTTGAGAAAAGCTGGCTTCTCTTAGCTGATATTTATATTCAGTCAGGAAAATATGACATGGCAGGGTACAAACTTGCATTCAATTACTTGAAAGCAAAAAGATATGTTGATGCCATTGATATATGCCATAAGGTTTTGGATGCACACCCCAATTATCCAAAGATGAGGAAAGACATTCTGGACAAAGCCCGAGCAGCCCTAAGATCTTagtgtgattttgtgtgtgtgtttttaataaggGATCATATAAACctatcaataaatataaatatatattttgcttatttCTCAGGATCTCCAAATTATTGAGTATGACACAATGGTACACAACTCTGATTATTCACTTTCCATTCAATATAATATCACGCAAGTGCTGTAGATAGTTTGTTGTTTATAGTAGACAATGAGATATTTAAGTGTGTAATTACGATATTGTTCACTATATTTTATGTGGGAAATAAAATTACTTCTTGGAGTGTGTAAGggtgtatttttatatgaaagtgtttttgttttgtttttaactaagAAGTCTTTTGTACGAAACTTCatgtaaataaaattgtgaTAATTGTGTCTTGGTTCTTCTACCATGTGACCTGTTTTTTCTCCTATACTGTGAATTTGAAATTAGTGATATAAAAcccatttgtttgcttttccattttgtgtCCAACAAATACATGTTATGAGCTTATGTGGAAATAAAATTGGACATTTGTCTGCAGTATTCACTATTCATGATTTACAACtgtggtttatttaaaatatatttttcacatgaaGGTGGTTTTGTTCACTTTGCTTGTTAAATCATGCTTAACTGAGGAAAATACTCATGGGCGCAGATTggtc

Function

GO: NA

KEGG:

id description
K19673 TTC21B, IFT139B; tetratricopeptide repeat protein 21B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159869 lncRNA upstream 814463 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 1881811 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2176519 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 2619577 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 2964527 8294518 ~ 8294873 (+) True G127096
TU160196 lncRNA downstream 388087 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 810460 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 1077234 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 1077234 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 1256400 12540081 ~ 12540318 (+) True G128074
AMCG00000976 mRNA upstream 6177 11242598 ~ 11253223 (+) True AMCG00000976
AMCG00000974 mRNA upstream 17017 11213271 ~ 11242383 (+) True AMCG00000974
AMCG00000975 mRNA upstream 46361 11211761 ~ 11213039 (+) True AMCG00000975
AMCG00000966 mRNA upstream 499903 10753086 ~ 10759497 (+) True AMCG00000966
AMCG00000967 mRNA upstream 579114 10649612 ~ 10680286 (+) True AMCG00000967
AMCG00000972 mRNA downstream 2814 11286495 ~ 11303124 (+) True AMCG00000972
AMCG00000986 mRNA downstream 95302 11378983 ~ 11393332 (+) True AMCG00000986
AMCG00000980 mRNA downstream 113206 11396887 ~ 11410209 (+) True AMCG00000980
AMCG00000989 mRNA downstream 225067 11508748 ~ 11509983 (+) True AMCG00000989
AMCG00000981 mRNA downstream 275060 11558741 ~ 11597550 (+) True AMCG00000981
TU159756 other upstream 1105213 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 2639205 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 9563153 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 9658761 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 10917629 339640 ~ 341771 (+) False G125561
TU160309 other downstream 715983 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3886230 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 4125431 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6739379 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 7262212 18545893 ~ 18547915 (+) True G129453

Expression Profile