RNA id: AMCG00000975


Basic Information

Item Value
RNA id AMCG00000975
length 417
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00000975
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11211761 ~ 11213039 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACAACTGCTTGTACCACCAGGAACAGAAAGCTTCCACCTGTTTTGCCAGGAATCTCTTGACACTATTGAGAAGAGGATTGCAGAAGAGAAAGCAAAGAAGCCCAAAGCAGAGCGTTACGATGACGATGATGAAAATGGCCCCAAGCCAAACAGTGACTTGGAGGCTGGAAAATCATTGCCATTTATTTATGGTGACATACCTAAGGGAATGGTTTCAGAGCCCCTTGAGGATCTGGACCCTTATTACATGAATGAGAAAACTTTTATAGTCTTGAACAGAGGGAAGGCAATCTTCCGCTTTAATGCCACACCTGCCTTGTACATCTTAAGCCCTTTTAACATTCTTAGAAGAATATCTATTAAGATTTTGGTACATTCATATCCTTTACACCAAGTTCAATCTCTGATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159869 lncRNA upstream 766824 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 1834172 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2128880 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 2571938 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 2916888 8294518 ~ 8294873 (+) True G127096
TU160196 lncRNA downstream 458729 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 881102 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 1147876 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 1147876 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 1327042 12540081 ~ 12540318 (+) True G128074
AMCG00000966 mRNA upstream 452264 10753086 ~ 10759497 (+) True AMCG00000966
AMCG00000967 mRNA upstream 531475 10649612 ~ 10680286 (+) True AMCG00000967
AMCG00000958 mRNA upstream 600352 10605668 ~ 10611409 (+) True AMCG00000958
AMCG00000957 mRNA upstream 608554 10579800 ~ 10603207 (+) True AMCG00000957
AMCG00000959 mRNA upstream 640856 10560556 ~ 10570905 (+) True AMCG00000959
AMCG00000974 mRNA downstream 232 11213271 ~ 11242383 (+) True AMCG00000974
AMCG00000976 mRNA downstream 29559 11242598 ~ 11253223 (+) True AMCG00000976
AMCG00000973 mRNA downstream 46361 11259400 ~ 11283681 (+) True AMCG00000973
AMCG00000972 mRNA downstream 73456 11286495 ~ 11303124 (+) True AMCG00000972
AMCG00000986 mRNA downstream 165944 11378983 ~ 11393332 (+) True AMCG00000986
TU159756 other upstream 1057574 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 2591566 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 9515514 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 9611122 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 10869990 339640 ~ 341771 (+) False G125561
TU160309 other downstream 786625 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3956872 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 4196073 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6810021 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 7332854 18545893 ~ 18547915 (+) True G129453

Expression Profile