RNA id: AMCG00000976



Basic Information


Item Value
RNA id AMCG00000976
length 690
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00000976
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11242598 ~ 11253223 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTCTATGAGGTGTGGGAGAAGTTTGATCCTGATGCCACACAGTTTATGGAATATGCTAAACTTTCGAATTTTGCCGATGCTTTGGAGCCCCCGCTTCGTGTACCAAAGCCAAACAAAATCCAGCTTATTGCAATGGACTTGCCTATGGTTAGTGGAGAACGAATTCATTGCCTTGATATATTATTTGCTTTCACAAAACGTGTGCTGGGAGAGGGTGGGGAAATGGACGCCCTTCGCGGGCAAATGGAGGAGCGCTTCATGGCATCAAATCCATCCAAGGTCTCCTATGAACCAATCACTACAACCTTACGTCGCAAGCAGGAGGACATGTCTGCCATTATAATTCAGAGAGCGTTTAGACGATACCTTATAAGGCGAACACTTAAAAGAGCCTCTTACttgtacaaagaaaaaaataaagccagGGAAAACATACTGGATAAAGAAGAATTGGTAATAGACAAATTTAACGAAAACTCCACGACCGAAAAAACAGACATGACACCTTCAACAGCTTCTCCTCCTTCGTATGACAGTGTCACAAAACCAGACAAAGACAAATATGAGAAAGACAAACGTGAAAAGGAGGATAAAGGTAAAGATATCAGGGAgcacaaaaaGATTGCATCCTACAGAGATGGTGATTTAAAATCTGATCAAACATACTTCAACAAGAAGGAAAATCAG

Function


GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159869 lncRNA upstream 797661 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 1865009 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2159717 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 2602775 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 2947725 8294518 ~ 8294873 (+) True G127096
TU160196 lncRNA downstream 418545 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 840918 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 1107692 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 1107692 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 1286858 12540081 ~ 12540318 (+) True G128074
AMCG00000974 mRNA upstream 215 11213271 ~ 11242383 (+) True AMCG00000974
AMCG00000975 mRNA upstream 29559 11211761 ~ 11213039 (+) True AMCG00000975
AMCG00000966 mRNA upstream 483101 10753086 ~ 10759497 (+) True AMCG00000966
AMCG00000967 mRNA upstream 562312 10649612 ~ 10680286 (+) True AMCG00000967
AMCG00000958 mRNA upstream 631189 10605668 ~ 10611409 (+) True AMCG00000958
AMCG00000973 mRNA downstream 6177 11259400 ~ 11283681 (+) True AMCG00000973
AMCG00000972 mRNA downstream 33272 11286495 ~ 11303124 (+) True AMCG00000972
AMCG00000986 mRNA downstream 125760 11378983 ~ 11393332 (+) True AMCG00000986
AMCG00000980 mRNA downstream 143664 11396887 ~ 11410209 (+) True AMCG00000980
AMCG00000989 mRNA downstream 255525 11508748 ~ 11509983 (+) True AMCG00000989
TU159756 other upstream 1088411 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 2622403 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 9546351 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 9641959 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 10900827 339640 ~ 341771 (+) False G125561
TU160309 other downstream 746441 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3916688 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 4155889 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6769837 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 7292670 18545893 ~ 18547915 (+) True G129453

Expression Profile