RNA id: AMCG00000982


Basic Information

Item Value
RNA id AMCG00000982
length 2826
RNA type mRNA
GC content 0.39
exon number 16
gene id AMCG00000982
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11600268 ~ 11611654 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAAGTGCAAAGTCAACAATCAGAAGGAAACTAAAATGAAGGACCCAGTGAGCGGGTGCACTTACAACCTGCTGTATCATGATCTCAAGAGGTTTTCGAAAAATGGTGAACATTACTGTAAGGAACTGATGAACATTCTTCAACAAAGGGCTGACCTAGAGATCAGTTATGCTAAAGGACTGCAGAAGCTGGCAGGCAAGCTCACCAAGGCATCAAGTGGCATGACAAAGAAttcaACTTACAATGCCTGGAATCATGTCTCCGAAGAAATGTGCTCCACAGCAGACGTACACAAGACGCTGGGAAGTGCTTTTCAGCAAGAGGCAATTCAGCAAATTCGACAAGTGCTTGAAGAACACACCAAAAAGATAAAGCCTTTGGATAATGCTGTTGAAAAGTCCGGAAAACTTGTAGTTATCAACTGGAATGATCAACTCAAGATAAAGAAGAAATTACTTGGATTAACAAAGGAACATGAAGCCCTTTTCAATTTTGTGGAAAGCAGCAAACACTTATCTACagtgaaagagaaacagaagATGCTTAACAGGTTGACAAAATCAGCTGAGATCCTGGCGAAAGCAGACGAAGAATACTACACCATTAACATGGCCGGGCATCAGTTCAGATTAAAGTGGGAGACAACGATGAAGAACTGCTACCAGaGCATTCAGGAACTGGAAAAACAGCGTATAGAGATTTTATGTGATATTCTCCAGAAGTACAACCAGCATATCTCCAGTTTTGGAAAGACTCTCATTGGTTGTCAGAAGCAGATACACCAAGCTATACAGAAGGTCAACGTGGAAAAGGATATACAAAACTTTGTGGAGGAGACAAGTGTAACCTCAGAAGACAGCAAAGTGGAGTTCTTGCTTGCAGATTATTTTGAGGAGGATAACAAAACTGCAATGGATAAAGAGAGAAGGAAGGCCTCCCTGAAGCTCAAACTCCAGCGACTGCAAGGCGACGTAACAAAGACGAGAAAAGACAAGGAAGGCTTGGAAAAAATGCTAAAGACATACACTGAAAACCCCTCCTTTTCAAACAAAAAGAACATAGATGAAACTGAGCAGCTGCTTGATGAGACAACACTGAAACTGAACCTCCTGGAGGCAACATATTTTAAACTCTCTACAAGCATGGCTGACCTGCAGGGGAAGTCAAAGCCTTCCCACCGATTTAGTGACAGCATCACAAAATGGAAAGATAAGGACTTTCAACACAGTGTCGTGCAATTACCCCGTCCTGTCAAGATAAAGAAAACTGCATACAGATCAAGAATGTCTTTGAGATCCTCAATCATATACATGGCCCCGCCGCAAAATAGTGCTGCCCAGCTGCCTCTGCCCACGGACAGCAGCGGCGCAGCCTGTGCCCCCGCCGAAACAGCGGAGACGTGTGAAGTATATGAAGACACGCAGAATGGATACCTGTCCGAATTTAATGACGAGGAAGAAAATCCAACAGGTCAAGTGTTGCCCACTATTGGTAAATGCAGAGCCCTTTATGACTTTGTGTCAGACAGAGAGgatgaattaaacattaaagaaGGCGATCTACTCGAGATTCATCAGAAAGACAACAGTGGTTGGTGGTACGGATCTTTAAATGGAAAGAACGGCCATTTTCCTTCATCTTATGTGGAAGAAATACTGCTATTATGTACTAACAAGTTCTCACAAGCATgatatatattacagtacttGCATACTTGTACGCGTCATGGACCACGTTTCTAAATACATCTGCCAACTGTTTTCAAACTGTGACTAGATCTATATTACATGTCTTACACTGAAGTCTAGCTTCGAATGTTTTGTAACAAACATACTGTGACATATCGACCTTCAAATGTATAAACTTGGCAAACTGTCAATCTCAACATCAAAacaatgtttcctttcaatGTGATCTGTGAAGCAAAAGTTTTTAAGTTCATATTTAAGTACTTAGCCACTCcttttttcttaacattttcTTGACAGTGTATGAGGGCAGAAAACAATTCTAGAGGACAGTTATACTATTTCTTATACCCAGCTGCTTTAGGGCATGTAGGAAGCTTCCTTATGATACCCCATGATGGTTATACCTTCCAGCCGAGATATTTCTTCATATACCGCTTTCATTGTAGATagtaacagaaaacaatatttgtttttcttttaattgtaaaatatgaatagaaTATGGCAAAATATCTTGGTATAACTAAGTTTGCTATTCCACTGCTGTTACCACAACATTTCCCCGAATCTCAAGAAAGACTGTACAGGTTCAGCTGTTTGAATCAAAAGGTATCTGCCAATATCAATGAAATGTCAGGTCTTAAGACTTAAATTGCACTTATATATGTTGTAAATGTTGCTGCCTACAAAGTTATTGTAAAAAGACtgcactgtcattttaaaacatcaatatgaTGTTTGTGAAGGATCTTGGTTTCTCATGAAATTAATAGTAATTTCAGTCCATTGCCACTGCAATCAGTTTACACTCACTGATTAGCAATTAAATGACAATCAACAGCTTCTGGAAAGTAGGAAAAAGGCATAACCATTCCTCCACTTAGATCATCTGATGTGTAACTGACTaggactgtttgtttttcttcacactgTGTGCCATGCAACTTTTAGAGaacatttatgtacatttttaacttTGTATACCATCAATATGGTTTATCAAACACATATTTCCCGATTTGTTGTACTCCAATaatccaattaaaaaagtaattatgaGAAATTAAATCGATACAATACATTTGCTGTTAATAATCACTgttaatagtttttcttttcttcgtGAGATGCCTC

Function

GO: NA

KEGG:

id description
K20126 NOSTRIN; nostrin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159869 lncRNA upstream 1155331 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2222679 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2517387 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 2960445 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 3305395 8294518 ~ 8294873 (+) True G127096
TU160196 lncRNA downstream 60114 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 482487 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 749261 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 749261 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 928427 12540081 ~ 12540318 (+) True G128074
AMCG00000981 mRNA upstream 2718 11558741 ~ 11597550 (+) True AMCG00000981
AMCG00000989 mRNA upstream 90285 11508748 ~ 11509983 (+) True AMCG00000989
AMCG00000980 mRNA upstream 190059 11396887 ~ 11410209 (+) True AMCG00000980
AMCG00000986 mRNA upstream 206936 11378983 ~ 11393332 (+) True AMCG00000986
AMCG00000972 mRNA upstream 297144 11286495 ~ 11303124 (+) True AMCG00000972
AMCG00000984 mRNA downstream 8604 11620258 ~ 11622636 (+) True AMCG00000984
AMCG00000985 mRNA downstream 44999 11656653 ~ 11662646 (+) True AMCG00000985
AMCG00000983 mRNA downstream 56916 11668570 ~ 11675059 (+) True AMCG00000983
AMCG00000990 mRNA downstream 125815 11737469 ~ 11740984 (+) True AMCG00000990
AMCG00000996 mRNA downstream 134505 11746159 ~ 11784742 (+) True AMCG00000996
TU159756 other upstream 1446081 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 2980073 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 9904021 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 9999629 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11258497 339640 ~ 341771 (+) False G125561
TU160309 other downstream 388010 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3558257 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3797458 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6411406 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6934239 18545893 ~ 18547915 (+) True G129453

Expression Profile