RNA id: AMCG00000983


Basic Information

Item Value
RNA id AMCG00000983
length 1720
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00000983
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11668570 ~ 11675059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGACAGTGTCCCAGTGCAAATGTGCAGTGCAGTTTGACACTGGAATAGGCCAACTAGTATAAGTAACCCAAGCTCCTGTTGAAAGGTATAAAAGAAGACAAAGACCATGGTATCTGAAGTGGAGAATGGAACATATAGTTTCACTGAGctcTTCATGTCAAACCCAGTGACCACAtgcattttggccagtgttttggCCTTAATTGCTCTCTGGTACATAAAGGATTCCCTGAAGATCGATCACATTGACCAGAAGTATGTCTTAGTAACAGGCTGTGACACCGGCTTTGGGAATCTCTTGTGTAAGCAGCTTCACCACAGAGGGTTCTGCGTCATAGCTGCATGTCTGTCAGAGAAAGGGGCTGACGATTTGAAGGCTGCCACCTCCCCCAGACTGAAGACAGTCCTGCTCAACGTTACTGACAGCACCAGCATTGAGAACGCGTTTCAGTTTGTGCAGGCTGAGACTGGGGAACGAGGTCTCTGGGGTTTGGTAAACAATGCTGGGAGAGCCACGCCCATTGGCCCCACAGATTGGATGCAAATGGAAGATTATAAAAAGGTCCTTGATGTGAATCTGATGGGCTTGATTGAGGTGACCCTGAAGTTCCTTCCACTTCTGAAGAAAGCCAGAGGCCGGGTGGTGAACGTGGCCAGTATCATGGGCAGGCTGTCTATGATAGGGGGAGGATACTGCTTATCCAAGTGGGGTGTGGAGTCCTTCTCCGACAGCTTGagGAGGGACATGCACCATTTCGGTGTCAAAGTGAGTATAATAGAGCCCGGCTTCTTCAAGACCGCAGTGACCAGTCTGGAGACTATTGAGGCAGACCTGAAGAGACTCTGGAATTGCCTGACACCTGAGGTCAGGGACTCCTATGGAGCACAATATTTTGAGGAATATCTGAAAGCTCAGCGTTTCTCAATGAATATCTTATGCAGTTCTGACATCTCGAAAGTGACTAACTGTATGGAGCACACCTTGACCACACGCCACCCCAGGACACGCTATGGAGTCGGGTGGGACGCCAAGTTCTTTTGGCTTCCTTTGTCCTATGCACCTACATGCATCTCAGACTTCATTTTGAGTACACTATTGCCAGTTCCTTCAGGCAACAAAATTGTCCAAACAAATCAGGTAGCTATTTAAGAAACACaagcaaaattaatttaaaaaacttaTTCACTAGTTTTAAATTCTGTTTGAGTCTAACATGTCAACCTCTTGACTTCATCTGGATCTTGATCTTGGGAATGCTGTCTAAATTAACCAATATagcatcaaattaaaataaagctccCAATCTCAAGTTCACAAAGTGCCATATTTTGCTGAGGTGTTTTCcctgtgaagaagaaaataaagttgtgGGGATGGGATATGAGACTCTCCTAATTACAGAGGATTATCTGAGTTTTCCAATGACAGGAGAGAGAAGGCACTCTGAATGAAGCAAAACAGCAGCAGATAAAGATGAATGTGAATTAGGATTAAGAAAGTAAAAGTAatcgattaaaaataaatctactcAGAACAGGAACAATAATCTGTTAgagaactaaaacaaacattttcagactGTGATTAATAGTAAATTAGACTCTTTAGGGTGAAGCCTAAATTAGATTTATACAGCATCACTTTTGTTTATATGGTATATAATTCTACATATATGTTAAATGTGGtcaatattattgtatttttaatcatgtaaag

Function

GO: NA

KEGG:

id description
K11154 RDH16; retinol dehydrogenase 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159869 lncRNA upstream 1223633 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2290981 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2585689 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3028747 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 3373697 8294518 ~ 8294873 (+) True G127096
TU160371 lncRNA downstream 419082 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 685856 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 685856 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 865022 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 930980 12606039 ~ 12655172 (+) True G128101
AMCG00000985 mRNA upstream 5924 11656653 ~ 11662646 (+) True AMCG00000985
AMCG00000984 mRNA upstream 45934 11620258 ~ 11622636 (+) True AMCG00000984
AMCG00000982 mRNA upstream 56916 11600268 ~ 11611654 (+) True AMCG00000982
AMCG00000981 mRNA upstream 71020 11558741 ~ 11597550 (+) True AMCG00000981
AMCG00000989 mRNA upstream 158587 11508748 ~ 11509983 (+) True AMCG00000989
AMCG00000990 mRNA downstream 62410 11737469 ~ 11740984 (+) True AMCG00000990
AMCG00000996 mRNA downstream 71100 11746159 ~ 11784742 (+) True AMCG00000996
AMCG00000997 mRNA downstream 111483 11786542 ~ 11795450 (+) True AMCG00000997
AMCG00000993 mRNA downstream 127796 11802855 ~ 11811289 (+) True AMCG00000993
AMCG00001001 mRNA downstream 140544 11815603 ~ 11816325 (+) True AMCG00001001
TU159756 other upstream 1514383 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3048375 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 9972323 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10067931 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11326799 339640 ~ 341771 (+) False G125561
TU160309 other downstream 324605 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3494852 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3734053 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6348001 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6870834 18545893 ~ 18547915 (+) True G129453

Expression Profile