RNA id: AMCG00000985


Basic Information

Item Value
RNA id AMCG00000985
length 1450
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00000985
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11656653 ~ 11662646 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGGCTTGTGTGTGAGGAGCACATAAAGTGAGGGAGTTTGAGCTTCACTCACACTGAGGGCTGCCGCTCACCAATAAACATGTTTCTATATGTCCTTGCTGTGGTGGCACTCTTGTGGTTGTATCGCTGGTACAGGGAAACTAAGAGAGTCCCCAATAAATCTGACAAGTATGTATACATAACTGGATGCGACTCTGGGTTTGGAAACTTGCTGGCAAAACATCTGGACAAATTGGGCTTTTGTGTGATTGCTTCCTGCTTCACTGAGAAGGGGGAAGTGGAACTGAAGAAAGTCTCTTCTGAAAGGCTCTCAACTGTCCATCTTGATGTAACCAAATCTGACAGCATTAAGAGAGCTGCCGAGTTCATAAAGACCAAGGTTGGACAAAAAGGTCTGTGGAGTGTAGTAAATAATGCAGGTGTGTCCGTCCCATCTGGTCCCTGTGACTGGCTCACTATTGACGATTACAGACAGATGCTGGATGTGAATCTGATGGGCGTTATCGAGGTGACGATGAGTGTGCTCCCTCTCATCAAGAAGGCGAGAGGAAGGGTGGTTAATGTGGCAAGTGTGTTTGGGAGAATAAGTCCATTTGGTGGACCGTATTCCATTTCTAAATATGGGGTGGAAGCCTTCAATGATAGCCTTAGGAGAACCATGCTCCCTTTTGGAGTGAAGGTACTGTGCATTGAACCTGGGTTTTTTAAAACCAGTGTGACTGACATTGATCTATTAAAAAACTGTGTTGATAAACTTTGGGAAAAAATACCTCAGGAAACCAAAGATGAGTATGGAATTGATTATCGCCATAAAGtgTCCGTATTAATGAAGGAGAAGTTCTCCCACCTGCCCGACTCAGACCTGATGAAAGTGGTGAGCTGCATGGAGCACGCTATCGCAGCTGTGCATCCACGAACCCGCTATTCGCCAGGATGGGATGCCAAGTTTTTCTGGCTTCCTCTGTCTTACATGCCAACAGTGATTTCTGATTATCTGCTAACTAAAGATAATGTTAAACCAGCAAAAGCAGTTCAGTAATGCAGAGATTGTAGAGTGGTGCATAGACTGCAGTTGCCCGTAGTATATACAGCTTCAGCACTCTTCCAAATCGGTGTTTCACATCAGTCAAGTTGTgcccatttccactggccatgTTTAGGGTGTACGGTTCTAGCTCGGACAGACCAAGGTGCACCTAAGGGTGGACAGTGGAAATGGGTTATGAGAGTCTTTCTGCAAGTCACAGTTAAAATGTCTGAGCGTTcctttgcatttgaaatgtatatttttatgtgaCATATTTGCAATGAGTGggaatatatttgtaatttctaCCTAACTCTTATATATCTTGGAGCTATAATCTTGAATGTTATGAGGTAATCATTGTAATGTGTTATGAGTTTGTCTAACCCCACCCCTGAATAAAAGTATTTAGAATTAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K13369 HSD17B6; 17beta-estradiol 17-dehydrogenase / all-trans-retinol dehydrogenase (NAD+) / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159869 lncRNA upstream 1211716 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2279064 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2573772 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3016830 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 3361780 8294518 ~ 8294873 (+) True G127096
TU160196 lncRNA downstream 9122 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 431495 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 698269 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 698269 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 877435 12540081 ~ 12540318 (+) True G128074
AMCG00000984 mRNA upstream 34017 11620258 ~ 11622636 (+) True AMCG00000984
AMCG00000982 mRNA upstream 44999 11600268 ~ 11611654 (+) True AMCG00000982
AMCG00000981 mRNA upstream 59103 11558741 ~ 11597550 (+) True AMCG00000981
AMCG00000989 mRNA upstream 146670 11508748 ~ 11509983 (+) True AMCG00000989
AMCG00000980 mRNA upstream 246444 11396887 ~ 11410209 (+) True AMCG00000980
AMCG00000983 mRNA downstream 5924 11668570 ~ 11675059 (+) True AMCG00000983
AMCG00000990 mRNA downstream 74823 11737469 ~ 11740984 (+) True AMCG00000990
AMCG00000996 mRNA downstream 83513 11746159 ~ 11784742 (+) True AMCG00000996
AMCG00000997 mRNA downstream 123896 11786542 ~ 11795450 (+) True AMCG00000997
AMCG00000993 mRNA downstream 140209 11802855 ~ 11811289 (+) True AMCG00000993
TU159756 other upstream 1502466 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3036458 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 9960406 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10056014 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11314882 339640 ~ 341771 (+) False G125561
TU160309 other downstream 337018 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3507265 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3746466 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6360414 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6883247 18545893 ~ 18547915 (+) True G129453

Expression Profile