RNA id: AMCG00000990


Basic Information

Item Value
RNA id AMCG00000990
length 1498
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00000990
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11737469 ~ 11740984 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGGGCGGCCGCCGTAAGAGTGTTACTATGAGCAACAGCAGAAGCGCCCGTCCGCAGATCAACAGGCGCACTGTACGGCACGGCACTGTACGGCAGCGGCTGTGTCTCCGCTATCAGAGCATCTGCACAATAAAACCAGCAAAAACAACACCTGCAGCATGACATCCCCGCAGCGGACTCCCAGAGACCTGAAACAGATGATCACCGACACCAAACAGCTTCGAGGACTGTCCCAGGACGACAAGACCGAAAACGCCCTGCTGAGATCCAGGATCGATGAGCAGTCCAATCTTATCTGTATCTTGAAGCAGAGAGCGGACGAAATGCTCCTGCGCTGCCAGGCCCTGGAGAGGATAAACAGTGAACTGGAAAGCCTGAGAGAGGATGTCCAGAAAGAGCTGGAGAACGAGAGGAAGCGCTCCTCCCAGCTGGAGCAGAGGTTTCTGGACCTGGCGGCCAACCACCAAGAGCTCATCAACTTCAAGGATgagtacaaaaaacaaaatggacagCTAAGAGAGGAGAACCAACAGCTCCAGGAAGAGAACGAGAACCTCTTCAGTAAAGAGCTGCATGAGAAAGAGGAGGTGATCCTAAAGCTCACCCAGGAATTAAAGGACCTGGCTGAACAACACAAGATCCTGGAGATCGAATATAAGGAAAAGTCAAGTGGCTTCCAGACCAAGCTGAAGGAACTCATGATAATCCACCAAACTAAAGAAGCTTCTTTACAGGGGGAATTGCAGATTACTCAGAAACAGTTAAAGGATGCTGTGGACATGTGCACCGAACTGGATTTACAACTCAGACGAGCAATGGACAAGGATGCCTTTGAAGAGTCTCAGCTGCAACAGAAATTAGAAGCTTTGGTGAAGGAGAAAGATGAACTTCTGGATCTGTCGATGCAAAGGGGGAAAATTATACAGGATAAACAGAAAGAGATACAGGAGCTAGAGGAAAAAAGACAGGAGGCAGAAAAAGCAAGAGTAACTGCAGAAGAACGGTTTgagaaagcagcagcagaagtgGATGCAAACTTGAAAGTTCAAGATCTTCAGCGTTGCCTTGATGAATCTGAACAATCATACAATGAGCTAAAGAAGGATTTTGAAGCCTataaaaaacacagcagtgacCTTCTTGCAAAGGAAAAGGAGTTAAATGCCAAACTACGCCACATGattgcataaatacattttttctatcAATGTTCTTTAAACCATGCATGTTACACAAGTGATTTAAATAACTGTTGCACTCCTACTTATTTTAtactttcaataaaatgtaatcaactgaaatgcattttccacaacttgagcattttgtttttttaaatatccaggAATTTGTAAGATTCAAACCATGTAACTTGAGCTTGAAAGACTGGGTTTCAAATCCAACTTTTGATTGAAATTAGGTGAAATTGTAGATACCaggaaagtgtttgtttttgtaagtcaGCTTTTTGTCCAAGGGTGGAAGTTGGTTGGAAT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159869 lncRNA upstream 1292532 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2359880 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2654588 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3097646 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 3442596 8294518 ~ 8294873 (+) True G127096
TU160371 lncRNA downstream 353157 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 619931 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 619931 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 799097 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 865055 12606039 ~ 12655172 (+) True G128101
AMCG00000983 mRNA upstream 62410 11668570 ~ 11675059 (+) True AMCG00000983
AMCG00000985 mRNA upstream 74823 11656653 ~ 11662646 (+) True AMCG00000985
AMCG00000984 mRNA upstream 114833 11620258 ~ 11622636 (+) True AMCG00000984
AMCG00000982 mRNA upstream 125815 11600268 ~ 11611654 (+) True AMCG00000982
AMCG00000981 mRNA upstream 139919 11558741 ~ 11597550 (+) True AMCG00000981
AMCG00000996 mRNA downstream 5175 11746159 ~ 11784742 (+) True AMCG00000996
AMCG00000997 mRNA downstream 45558 11786542 ~ 11795450 (+) True AMCG00000997
AMCG00000993 mRNA downstream 61871 11802855 ~ 11811289 (+) True AMCG00000993
AMCG00001001 mRNA downstream 74619 11815603 ~ 11816325 (+) True AMCG00001001
AMCG00000995 mRNA downstream 85392 11826376 ~ 11839893 (+) True AMCG00000995
TU159756 other upstream 1583282 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3117274 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10041222 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10136830 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11395698 339640 ~ 341771 (+) False G125561
TU160309 other downstream 258680 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3428927 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3668128 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6282076 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6804909 18545893 ~ 18547915 (+) True G129453

Expression Profile