RNA id: AMCG00000999


Basic Information

Item Value
RNA id AMCG00000999
length 3405
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00000999
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11795399 ~ 11802453 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGAAGTGAAATGGGATTTTAAGTTATTAATGTGTGCTGGGATTGGGATGTGGTGTTTGTCATCATGGCCTTGGGTGTAATTCACAgctaaaataaactgaagtaaATGAAAAATGGCTGTATATGTGATTCATGGAAATGCTGGGCAGTAGATGTTAACGTGCGGGTCACATGTGTGTTTGGCAGGCATGGCCCggctgtgctcagtgtgaatgTCAAACCTGTAAGGCCCCGCACACAATGAGGGGAAATCATCCCAACATATCCCACTGAAAGACAGCGCCTGGACCATGTATCGGCTGAGGAGTGTGTGCCGGGCCTCCCGCAGGCTCTTTCACGCCCGGGCTGTAGCCGGCGATCAGGTGCTGGAGCAGCTGCATGTCTGCTCCAGCGAGGATCAAGTCTTAGATGTGGTGGGCAAGAACAAGGCCAAGCTCTCCGTGCGCCACGTGAcctgtgccatggacatgctgTGGCGGTTCCAGAAGGACAGGCCGCACATACTACGCAGGGTGGACTTCATCAAAAACCACCCCCAGTTCCTCACCCTGCGTGTGTTGGCAGAGAACAAGATCGAGCTGATGGATGACAGTGTGCTGGTAGACACGCTCTACAACGTACTCAGGCTCAATGTGGAATTGCATGACTCTCTGATCCAGGAGCTGGTGACAGAAGCTTCGATCAGGATGGACAGATTCCCAATGCAAACGCTGTCCAAGTTTGCCATCTGCCTAAATGACCAACATCTGCAGCACAGCCCACTCATGGGGAGCATTGCTGAGATTTTAAACCAGAAGCTGGACACCATACAAGATGCCAGAGTCCTGACCACCCTGATGATCAGCGTGTCGGCCCTCATCTCTCCGCGGCTCCGGGACTCCCTCATCGAGAAAGCGGACTCCCTGCTGGACACCTCGGACACCTCTCATTTCAACAACCCCAGGAGGGTGGTCCAGTTTCTGCGCAACATCAAGCACAGCTATAGGCCACTGCTGCTGAAGTGCAACCAGATTTTCATTCGCAATATCAAGGATCTGGACGCAGAGTACATCAGCATCATCCTTGGGCTTTATCAGTCCCTCCAGTTCAGTAACTGTGACTTTCGCCTGGCTGTGAAACGGAGGCTCACCGAGCTGTTTGATTCCTGCACTGAGCCCACGTCCTTCAGCAAACTCTTCGCTTCACTTGGGCCCATTGCTGGAGAGGATACTAGGGAAAGGCTGGAAAATACTGCATTGCTACTGGCGGATGAGTTCAACTCCCAGCAGGCCCTGGCAGTGGCAGAGACCATGGTGGAAATGGAAAGCAGAAACCTCCAACTGATTAACAAAATTGCATCGATCTTTTACAAGGACTTAGATTTATGTAAACCCATGGAGGTGACTAGAATGACTCAAGCCCTGATTACGCTGCGCTACCAGAATCCTGACATGTTCGTCAAACTGAGGAGTATACTGGTGAGTTACCTGCAGACCAGTGTGTATCCCTGTGAGGTGACCATGCTGACCCGGGTGCTGTCCATGCTGCCCTGTGCTCGTGTGGACGAGGCGGTGACCTCACGGGTGGACGCTGTGCTGCCGCAGTGCAGCCTCAGTGACCTAAACTCCCTGGCCATCGTCATCGCCAAGTGGGTGCGCAACGATCCCTCCCACAGGCACGCCACGCCAAGCGTCTATGTGAAGCTGCTGCAGAAGCTGAACATGGTGGGGCTGGAGAGGCTACGGCACGCAGACAACATGGATCAGCTGCTGGAGGAGCTCAAGTATGTCCCCGGAGAATGGTTTGAGGAGATGCTGCTGGAGGAGACCATGGGCAGCTTGCAGAGGCTGATGGACCAGATCTCGGTGAACAACGTCACTGAGCTCGCCCTTTTCCTAACCAGAACCAACCACCTCTGCACCGCTGTGATGGACAGACTCGCCGTAGTGGCCATGGAGCACATCGAGAAGATCCATTATTCCGGAACATATGCCACCATCCTGCCTTTCGCTATCCTGAACTACGATCTGCCACAAGGCGACGAGTTTTACAACGTCTGTGTTGAACACTTCAGACCACATTTAAATTCCTTTGACCCCCAtctgctggtgctgctggcaTATTCTCTGGCAGTGGCAGATTGCTTCCCAGAGGATTTAATTCGGAAGATTTTTAATGTGGATTTCCTGGCCAAGCTGGATGCCCAGTTACAAACTCTTCCCGACGCTCTGAACATGCGGATCAGACTGCGGCTGATGGAGCTCAACCGAGCCGTGTGTCTGGAGTGCCCCGAGTTCCAGGTCCCCTGGTTCCACGAGAGATACTGCCAACACCTGCAGAGGAAAGGCTGTGAATCCATCAGCGCAGTTCAACAGCAGATCCATAAAATGCTGGGGGAGATTCTTGGAGGAATGAACTATGCCAAAGTGTCTGTACTTACGCCTTATTTCTATGCAATAGACTTTGAATGTATCCTGGACAAACACAGGAAGCCCATCCCATACGTGGAGCCGAGGGTCCTggtgacagagggagggaaggtGCAATGGGGGCCTGGCACTGCCTCCCAGGAAGGGACTGAACTCCCCCCAGGGGCTCAGCGTGTCGCTGTGGATTTCCTGGATTCAAAATCCTTCTGTAAAAACTCCCATCATATGAAAGGAGAGGCCATGATGAGGAAGAGGCACCTGGAGATTCTGGGATACCATGTATGCCAGGTTCCTCACTTTGAGTGGAATTCAATGGAACTGTCGACAAATGACGCTTGGAAAGAATACCTGCGAAAGAAGATATTTGCGGATCAATCTTAATGTTGATCGTCAGATGTCTCAAAAGGAGGGACAATTTTTTTAGGAcgattgtattgtattggagaaataaatataatttctcttGCAACTGGCATTAATGTTGTTTAGTGGACCGGCACTCAAATTAGCAGTAGCTTAGACGAGACAGGATGGGATGAGCTGGTCTGTGCTTACAGCCTTACGGTCTCTGAAGAGAAGACTGCCATAGTCACTGTAAACTTAGTGATATTAAAATACCTCCAGTTTAAATTTGTTTCCCCCTCCATCTTGTATTAGTGCTCCAAGATTTTTCCACTTCAAGCTTCAGGTTTTGCATTGGATGTAGCTTCTTGACTCTCCATGAAGAGCTATAAATATTGCCTCTTTCGAATGACCATGTATCAGTTTCTATATTACATTATTGATGTCACTCACCCCTTTACTGAACCACACTGGTATTTGCCTCTTGCAGCTGTCTCACACTATGCAACACTTGGAAACCTAAGAGACTGTGAAGAACAATGTTTTCTATACATCTAGAAGTGAAATTAACAGTTTGTGTTTACAatttatagaaatatatgttttagtttaaaatgtttattttacaaaaaaaaaaaatcaaaggaaCATCAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160162 lncRNA downstream 177294 11615457 ~ 11618105 (-) True G127747
TU160157 lncRNA downstream 183787 11610243 ~ 11611612 (-) True G127743
TU160156 lncRNA downstream 185769 11609271 ~ 11609630 (-) True G127742
TU160154 lncRNA downstream 189223 11605804 ~ 11606176 (-) True G127740
TU160125 lncRNA downstream 387539 11396710 ~ 11407860 (-) True G127718
TU160341 lncRNA upstream 106533 11908986 ~ 11911822 (-) True G127899
TU160449 lncRNA upstream 352055 12154508 ~ 12158483 (-) True G127976
TU160530 lncRNA upstream 556106 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA upstream 556106 12358559 ~ 12387584 (-) True G128045
TU160562 lncRNA upstream 690725 12493178 ~ 12495215 (-) True G128070
AMCG00000991 mRNA downstream 49218 11741361 ~ 11746181 (-) True AMCG00000991
AMCG00000992 mRNA downstream 61759 11675086 ~ 11733640 (-) True AMCG00000992
AMCG00000987 mRNA downstream 140393 11625091 ~ 11655006 (-) True AMCG00000987
AMCG00000988 mRNA downstream 180411 11611903 ~ 11614988 (-) True AMCG00000988
AMCG00000979 mRNA downstream 239278 11538485 ~ 11556121 (-) True AMCG00000979
AMCG00000998 mRNA upstream 8981 11811434 ~ 11815050 (-) True AMCG00000998
AMCG00001000 mRNA upstream 41684 11844137 ~ 11847160 (-) True AMCG00001000
AMCG00001015 mRNA upstream 292013 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001014 mRNA upstream 326112 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001021 mRNA upstream 390746 12193199 ~ 12210908 (-) True AMCG00001021
TU159975 other downstream 1095051 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 1517188 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2376074 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4149677 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5061582 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 929731 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 1554530 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2790246 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 3376788 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 3561614 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile