RNA id: AMCG00001000


Basic Information

Item Value
RNA id AMCG00001000
length 905
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00001000
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11844137 ~ 11847160 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGACCGCTTTTGCTGTGGCTCCGTGTTTACCCTCCGTGCTTCCGCCTTGGGTTGCAGCATGGAAACTATACAGCACTTTACATGTGTTTCACTGCACAATCgataaaacagcacaaaataacAACGTGACTACGGGTAtttgaaagagggagagaaatatacaatattttttgcttttacgTGACATTTGTCCTGATTAAGGAAGGTGAACAGACGAAGGAGGACGTCACATGGCAGGGTCCTAATTGCAATCTAATCCATATAAAAGAATTGCAGACATGAAACTGAAGGAGCTGGAAAGCTGCCTACAGCAGGTCGATGTGTTTGAAGACCCAAAGCTGCTTCTCGAGCAGTACCCCACCAGCCCCCACATCGCCGCCCGTATGCTTTATACCATCCACAACTCCTTCGATGACATTGAAAGCAGGTTGGTGGCAGATCTGGGATGTGGCTGTGGCGTTCTCAGCGTCGGCGCTGCCATGCTAGATGCAGGGCTGTGCGTGGGCTTTGACATTGATGAAGATGCGTTGGAGATATTTAGCAGGAATGCAGAAGAGTTCGAGCTCACAAACATAGACATGGTTCAGTGTGACGTCTGCTCGTTGGAGTCCGACAGATTCTACAATAAGTTTGATACAGTCATCATGAATCCACCATTTGGAACCAAACACAATAAAGGTATGGACATGCACTTTCTCAAAACAGCATTAAACATGGCAAGCAATGCGGTGTATTCCCTTCATAAGACATCAACACGAGAAcacatcCAAAAGAAAGCGAGTGATTGGAAAGTCAAAATGGAAGTATTAGCAGAGCTTAGATACGACTTGCCAGCAACATACAAGTTCCATAAAAAGAAATCGGTTGACATTGAGGTGGATTTCATACGCTTCTCCACGACG

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160162 lncRNA downstream 226032 11615457 ~ 11618105 (-) True G127747
TU160157 lncRNA downstream 232525 11610243 ~ 11611612 (-) True G127743
TU160156 lncRNA downstream 234507 11609271 ~ 11609630 (-) True G127742
TU160154 lncRNA downstream 237961 11605804 ~ 11606176 (-) True G127740
TU160125 lncRNA downstream 436277 11396710 ~ 11407860 (-) True G127718
TU160341 lncRNA upstream 61826 11908986 ~ 11911822 (-) True G127899
TU160449 lncRNA upstream 307348 12154508 ~ 12158483 (-) True G127976
TU160530 lncRNA upstream 511399 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA upstream 511399 12358559 ~ 12387584 (-) True G128045
TU160562 lncRNA upstream 646018 12493178 ~ 12495215 (-) True G128070
AMCG00000998 mRNA downstream 29087 11811434 ~ 11815050 (-) True AMCG00000998
AMCG00000999 mRNA downstream 41684 11795399 ~ 11802453 (-) True AMCG00000999
AMCG00000991 mRNA downstream 97956 11741361 ~ 11746181 (-) True AMCG00000991
AMCG00000992 mRNA downstream 110497 11675086 ~ 11733640 (-) True AMCG00000992
AMCG00000987 mRNA downstream 189131 11625091 ~ 11655006 (-) True AMCG00000987
AMCG00001015 mRNA upstream 247306 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001014 mRNA upstream 281405 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001021 mRNA upstream 346039 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001020 mRNA upstream 439007 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001024 mRNA upstream 553350 12400510 ~ 12415391 (-) True AMCG00001024
TU159975 other downstream 1143789 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 1565926 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2424812 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4198415 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5110320 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 885024 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 1509823 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2745539 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 3332081 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 3516907 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile