RNA id: AMCG00001001


Basic Information

Item Value
RNA id AMCG00001001
length 723
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00001001
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11815603 ~ 11816325 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGACTCTTGTAGTGCTGGACTTCGACCACACGGTGGTGGACGACAACAGTGACACCTGGGTGATCAGGTGCACCCCGGAGCAGCGCCTGCCGGACTGGCTCAGGAAGACCTGCCAGAAAGGGCGCTGGACGGAGTACATGGGCAGAGTGATGGCTTACATCGGCGACCAGGCCATCGCAGAGGACGCGATCAGACATGTGATGGAAACGGTGCCTTTCACAGACGGCATGTTAGAGCTTTTGAACTTCATCGATCGGAACAAAGACAAGATGGACTGTATCATCATTTCGGACTCGAACAGCGTCTTCATTGACTGGATCTTGCGGGCGGGCGGTGTCCGCGGGGCTGTGGACCAGGTGTTCACCAACCCGGCCCAGTTCGACGAGCGAGGCTACCTGACAGTGCAGTGCTGTCACTCCCACGACTGTGCTCAGTGTCCGCTCAACCTCTGCAAGAGAAAGGTCCTGCGGGACTTTCTGGGGAGCCAGTCGCACAACGGCGTGGAGTATCGGACGACGTTTTACATCGGCGATGGAGGCAATGACCGCTGCCCCGCCGAGAGCCTGGCCGAGGGAGACATCGTCATGCCACGGAAGGGCTACACGCTGGAGAAGCTGCTGTGCCGTGCGGGCCCAGCCAGCGCGTCCCTGAAACCCCGGGTCGTGGTGTGGTCGAGTGGATGTGACATCCTCTCTGAGATCATTTCGTCTGTGAATTGA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K13248 PHOSPHO2; pyridoxal phosphate phosphatase PHOSPHO2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160196 lncRNA upstream 72853 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1370666 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2438014 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2732722 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3175780 8638596 ~ 8639823 (+) True G127144
TU160371 lncRNA downstream 277816 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 544590 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 544590 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 723756 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 789714 12606039 ~ 12655172 (+) True G128101
AMCG00000993 mRNA upstream 4314 11802855 ~ 11811289 (+) True AMCG00000993
AMCG00000997 mRNA upstream 20153 11786542 ~ 11795450 (+) True AMCG00000997
AMCG00000996 mRNA upstream 30861 11746159 ~ 11784742 (+) True AMCG00000996
AMCG00000990 mRNA upstream 74619 11737469 ~ 11740984 (+) True AMCG00000990
AMCG00000983 mRNA upstream 140544 11668570 ~ 11675059 (+) True AMCG00000983
AMCG00000995 mRNA downstream 10051 11826376 ~ 11839893 (+) True AMCG00000995
AMCG00000994 mRNA downstream 24165 11840490 ~ 11847160 (+) True AMCG00000994
AMCG00001004 mRNA downstream 32052 11848377 ~ 11872129 (+) True AMCG00001004
AMCG00001006 mRNA downstream 66319 11882644 ~ 11909312 (+) True AMCG00001006
AMCG00001005 mRNA downstream 109000 11925325 ~ 11933099 (+) True AMCG00001005
TU159756 other upstream 1661416 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3195408 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10119356 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10214964 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11473832 339640 ~ 341771 (+) False G125561
TU160309 other downstream 183339 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3353586 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3592787 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6206735 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6729568 18545893 ~ 18547915 (+) True G129453

Expression Profile