RNA id: AMCG00001011


Basic Information

Item Value
RNA id AMCG00001011
length 3427
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00001011
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12149862 ~ 12157026 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCCAATACTGTTACAGTAGCCAGTTCCCTCtgtaatgcaaattatttatttaaaaaaacgttTAAAGCCCTAAACAAAGGACATAGTTATATAAGACTTGCGTAAGACTGCCCTGTTTTGAATGATCTCCTTCTGTCCTCTTAATTAGTTCAATACTGAGCAGTCGTGATAAGACTAGCTAACTGGCTGAAGTAACGCCTAAGGTCGTCAATAAACCGACGGGAAGATACAATTGAGTCAAACCAGATGAAAGGTAACCCATCCCCCCCGCACCAGCGCTGGCTGCCCTGCTCTCCCGAGGAAGTCGTTCACTTTTTCCGCTCTGTCCAGCTCTTTCCAGCTCTTTCCTAGACGGCCATGGAGAACTACACgcagtttctgtttttcctgttcATGTTGCTGTCCGTTGGTTTCGTCGCCATTGTCTTCGTCCTGCGATGGGTGCTCTTCTTCAAAGAGGGTCTTGCGTGGGATGGAGGACTGGCCGAGTTCAATTGGCACCCACTTCTGATCGTGACCGGAtttattttcatccaaggcATCGCTATTGTGGTGTTTAGGTTACCATGGACGTGGAAGTGCAGTAAATTGATGATGAAGTTCATTCACGCTGGCTTGAACACCCTGGCCTTCATCATTGCCGTCATTTCCATGGTGGCAGTCTTTGATTTTCACAACAAGCAGAGTATTCCCAACATGTACAGCCTGCACAGCTGGGTGGGCCTGGCTGCAGTCATACTCTACACTCTGCAGCTTTTTCTAGGTCTCTGTATCTACCTGCTTCCAATCACGTCTGCGTACCTCAGAGCTGTGTTCATGCCCATACATGTATACAGTGGCCTTTTCATCTTTGCTACTGTTATTGCCAGCGCCTTGATGGGAATCACTGAAAAGCTTATTTTTGGCCTAAAGAAGCCTGAGTACAAGCACTCCCCTCCAGAGGCCACCTTTGTCAATGTGCTGGGTGTGCTGATCATGCTGTTCGGGGCCCTAACTCTCTGGATAGCCACTCGGCCCTCGTGGAAGCGGCCCACTGACCAGGCCCCCGGCTCCAGGCAGTCCAATGGTGGAGGAAGTAACGGCGCTAAGCAGGAGCTCTCCCTGGCTGGTTGTGGAGCCACAGACGTACACAACCCTGAGTCCAGCATGGAGGCCCGCAAGAGGAACTGGAAACTGGATGAGGCAGGGCAAAGGTCCACCATGTGAGGCAGAATACTGCTTTCTGAAGGAAAATGCCATATTCTGCAGCTGAAGGGAAGTAAACttaattttcagaaatgtttcctGTGAAAAGTTTCCACAAACACCTTAGTCCTTTATTGCTTTCTGTCCATTGTTCTGAAAATCAATATGGTATTACTCTTTTTGTTACTCATGATTCACCTTGTTTTCTGAACCCATTCCTATGGTTACTGAATTGTCTTTAaacttttgttattttctgaaatgtactgGAATAGCAATAAATAAGTCCGTGCCTTTTGCGCAACCCTCAAGTGACTAACTCAAGTGAGAAGAATTTCAAgttttgcacttattttttatGCCAAAAAAGATCAGTTTATGtctaagaaaacaacaacacacagcaataataataataatagactgaACCATTGAACTGaactatttgtattatatattatacaatgtttatttgtttttaagaagaattccaaagaaaaaatgcattccaggttaaaatgtcttaaatctGTAGAGCCTTACACAAACAACTGCCTTACGTATTAggataatatatattatgtttgtttatatacttttaAGAAGAAAGGGAAGGGAAATCATGGCGATTGCtggatgttgtttttaatgttttaagaaaGTTGTAATAAGGAGAAGAGGTCATGGTAGCTTTATAGTTAATTTACTATAAAGTATATGATGGTACATTTTATACTTATTTTGAGCTTGTTTCTTAATGCAGTCTTACAGGATATGTATCTCACTTTGTATGACAGAAAACATTATTTAGGTAGAGCaaacatcattttcattaactaGAAGGAGCTTTTAGCACAAATTGTAGGAGCACATATATAAACCTAGAAAACGTGATTTCAGGTCTTAAGGTTGGAGAAGAAATGTTTACATCACTGTTCAAGAAAAGTAATTTTGAAGTGCAttataattgctttattttgggAAATATTCATAAGGTTACATGAATGTAACTGATAGCATCCTtagaatatttataatttaatgcatAACATAGATGGcactatattttattatgctggatttagtattttattaaaaaccaatggtataataatgaattaaactTGGCATCTTCCTTTTGTCTTCTCGTATTTTGTGTTAATACGTGTAGTTGTTTGTTGCATGATCATGTGTTTGTGCAATGCTTCATAcatctttcattaaaaaagtatcTTACAAAATAGAGTTTACACTGGATTTAACCAGACACACAGAAGTTATATTGCATTTGAGTGGCAATTGCAATGAATACAAACATAATACAGCTATACATACATCTGTGAACGATGATAACTCTCTGAAGACAGTATTtgacaatgtatttttcactcTAATTGGCATATGTACTATACTTCAGAAATAGGAGATTCAGTTTAATCTCCAAACTGTAATCATAGCTTCAGCTGTGGTAAATGTCCATTGCTGGAGTTTCtgaaaaaggaatgaaaattaTGATTGGAAGGTAATTGGAAGTCCAGTCCTTTCGATTTATAATTACATTCtgctttattaataaatatatctacCCGCATCTGTGTCCCTCTTTCCCATCAGCCCAATAAACATGTCATCCATAAATCCTGAAGAAAGAGGaggaatacatttatacataaaaaaaaatccaaacatttTGTAAGACCGATGAATTTCACAAAAATCATCCTTCATACCTATACAAGTATGGCTTTGTAAAACTGGTCATGGggtttaattataaatgtttatactGCACTAGGATGAAGTCCACTGTCCCCAGAGAAATACATTagctgatttgttttcataatcaGTAATCAGTATGTTCATTTTACAGACGGATCacttgagagagaaaaaaaaacaaaaacttactTTTGCCTTCCCTCCGAGCTTGTAACCTGTGGATTGCTTGAAGAGAAAACAGATTGTAATTCATGTTATTTGTCATAATGATGGCTATTTATAAATAGAATCAGccattatttaacaaaacaggGTTGTAAATCTTTCCAAAGGGGGGTATGAAAAATCATCTCACAAGCTCACCCAGAGAAGAAacatgaatgtgaaataaatgtatttatttgtaaaaatgtatttatttgtggttctgtttgattaaataatcAGCAAGGGTGTTATCCCCAGCTATCCCCAATCTGAAGACATAcatgtgtctgtatgtttgaaaccaataacaag

Function

GO: NA

KEGG:

id description
K08370 CYBRD1, Dcytb; plasma membrane ascorbate-dependent reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160371 lncRNA upstream 52999 12094141 ~ 12096863 (+) True G127924
TU160196 lncRNA upstream 407112 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1704925 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2772273 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 3066981 9081327 ~ 9082881 (+) True G127206
TU160510 lncRNA downstream 203889 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 203889 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 383055 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 449013 12606039 ~ 12655172 (+) True G128101
TU160610 lncRNA downstream 481959 12638985 ~ 12676174 (+) True G128107
AMCG00001012 mRNA upstream 567 12141730 ~ 12149295 (+) True AMCG00001012
AMCG00001010 mRNA upstream 57803 12079998 ~ 12092059 (+) True AMCG00001010
AMCG00001013 mRNA upstream 70965 12072503 ~ 12078897 (+) True AMCG00001013
AMCG00001003 mRNA upstream 87751 12040325 ~ 12062111 (+) True AMCG00001003
AMCG00001008 mRNA upstream 115246 12019805 ~ 12034616 (+) True AMCG00001008
AMCG00001018 mRNA downstream 14363 12171389 ~ 12191575 (+) True AMCG00001018
AMCG00001016 mRNA downstream 63381 12220407 ~ 12236714 (+) True AMCG00001016
AMCG00001019 mRNA downstream 82693 12239719 ~ 12270756 (+) True AMCG00001019
AMCG00001017 mRNA downstream 118159 12275185 ~ 12276967 (+) True AMCG00001017
AMCG00001022 mRNA downstream 131924 12288950 ~ 12385042 (+) True AMCG00001022
TU160309 other upstream 138437 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 1995675 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3529667 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10453615 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10549223 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 3012885 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3252086 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 5866034 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6388867 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 6398125 18555151 ~ 18558174 (+) False G129442

Expression Profile