RNA id: AMCG00001012


Basic Information

Item Value
RNA id AMCG00001012
length 2278
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00001012
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12141730 ~ 12149295 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttatatatatatatatacagataaattattcaaaaataataatcagcgCATTTGCACTTTAGTTTGTGAAAGAATCTGCAAATATCTAGTGCCGAACTACAACATCCAATGTGCAACGCGATTGATCCTAGCGCTTGGGTCCCTGAAGCTCTGACGTATTTCCGCTTAGTAAATCTGGTGGGTCACTATGTCTCAATCAATCCTCAAGCATGAGAGGTGACTGCTCCTAAATGATCGAGGAGGGCGCACAAGGAAACCCACTCATGATGACGTCTAGCTCAGCATCCACAGAGACCCCCTTTAAACACACCTGCCCACAGAGAAGAAATGCCACTGCTTATCTGAACTCTAGGTCAATTGGGCTGTTTTCCAGTGATCCTGGGAAACTGTTGCGAAAAAATATGTCATTGCTTCGGCAAATTGTGTTACAGGATACCACGCATTTCACAAATGTATGGACAAGGCATTCAAAAAGTCCAATTGCCTATGAGAGTGGAAGAATATACTTTGAAAATTACCGTTGCTGTTACAGTAGTATTCCTCCAAAGCCATTGCAGCTGTATGAACTGCCAAAACGGGCCAAGTCAGAGAAGATTGAAGATGCGTTATTGTGTCAGTGCCCCCTTGATAAAACACTACCAAGACCCTCAGACCATAAACCTTGTCTCTTGGCTCTTACTGCAAATAATTGGTTATATTGCTACTCGACAACGACCGGAGAGCAACTGCAGAAGGTGTTTTTGTCTCCACGCTATAAGTTCAGGTATCTGGGCTGGGATGTCCCTCAGCAAACTCTTTTCATGAAGTCTGTTCAGAATAAGGAGACACTTGTGGCTAGACAGGCAGGACACGAGCAGCCCATAATAATGTGCCTTGCTGTCTTCAGAGTCCTCCCTCTAGAACTGATAGGGATGCTGGAGATCAGTAAGAGGGTGTTTGGGAACAGAGTTGTTGATGTCATCCTTTCTCAGGGGATCCTGGTTGTCTCCTACAGCGTTGGGATGGTGAAgctgtttagttttgaaaatgtcGTAGAGCAGTTCATGGTCAAGAAGCTGACGCTTGGGGAGGAGTGTGAATGGAATGGAGTCAGGGTTTCTGTGGGAGAAGCTCCATCTGGCATTCCCTTCAACATCCAAATAACAGATTGTCCCCCTTTGCTGTTTGAAGTGTCatgtttggaaaatgtatttcagattggAGGGCATCCATGGCACTACATTTTCACTCCCaaacagaagaaacacaaaggCACCTATCATATTTGTTCATTGAAGGATAGCATGTTGGCAAAAAATGGAATACAAGAACTGAAGTGTTGTTCGCTGGAATCTGATCAGATATATTTTTACCCTGATGATTCTGGGAGGATTATCCATGTTGGTCCGAGTACAATACATGTACTCAAAATAGTGGAAACGCAAGGAAGTCTTTGTCAATCTGAGGTTATTCAAGAATATTCCATTGAAGCTCACCGAGAGAAGAATACTGATTCCATGGTCACTGTCACAGCTTCAGGTAGAATAGTGAAGAAGAGATTTCAGCAATTGGATGATGACCCAGAGCAAGAGACGTTCAGAAATGTACAGTATGAAGATGAGCTCGAGCTTTTAGCGGTTGTAGCTGTGACCCAGGCAGAGGTGGAAGGAAAGGCCCACATTGGTCTCTATGACAACCTGAGCGGAGTATTAATGAAGAGCCTTCCTCTGGTTGAATCCTGGGATGTGACCTACAGCCATGAATTGTTCTTTGACCGTGACACCATTGTCCACATTGAACAGGAGAAAAACCGCAACTTCCGCTGCCATATCTACAAAGTGACCCGCTGCCAAGAAGACACAGAATAGCAAAGGAATCTCGGTTATTTATTGGTGCTCAGCTGGTGCTTAGAAAACCTACAAAGCACACATTCCACTTTAAGTATTGTTTCCCAGCAAATGCAGTGTACCATGACAAACCAAGTGCACATGGTAATAGcagttttatataatttgtaaataaaatattaaggattatttcagtttgtctgCTTGTGAAAATGTGCCAAGTCTTGTTATCTTGAAAGATCTTTTACTATTAAtagtactattattattcttcaTGCATTCTAATAATCACTAACTCCTTCGCAGTTCTTTTGCTATACATACCAAATTTAAGATATTGCTGACATATTGTGTACTGCTGCAAACCTGGAATATATCTCCTTACATATCAGTAGTTATCTCCCTGACAAGAGCATCCCCCAGATTTCATGATGTCATTTCACTGTTTGCC

Function

GO: NA

KEGG:

id description
K23331 DCAF17; DDB1- and CUL4-associated factor 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160371 lncRNA upstream 44867 12094141 ~ 12096863 (+) True G127924
TU160196 lncRNA upstream 398980 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1696793 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2764141 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 3058849 9081327 ~ 9082881 (+) True G127206
TU160510 lncRNA downstream 211620 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 211620 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 390786 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 456744 12606039 ~ 12655172 (+) True G128101
TU160610 lncRNA downstream 489690 12638985 ~ 12676174 (+) True G128107
AMCG00001010 mRNA upstream 49671 12079998 ~ 12092059 (+) True AMCG00001010
AMCG00001013 mRNA upstream 62833 12072503 ~ 12078897 (+) True AMCG00001013
AMCG00001003 mRNA upstream 79619 12040325 ~ 12062111 (+) True AMCG00001003
AMCG00001008 mRNA upstream 107114 12019805 ~ 12034616 (+) True AMCG00001008
AMCG00001009 mRNA upstream 124508 12014714 ~ 12017222 (+) True AMCG00001009
AMCG00001011 mRNA downstream 567 12149862 ~ 12157026 (+) True AMCG00001011
AMCG00001018 mRNA downstream 22094 12171389 ~ 12191575 (+) True AMCG00001018
AMCG00001016 mRNA downstream 71112 12220407 ~ 12236714 (+) True AMCG00001016
AMCG00001019 mRNA downstream 90424 12239719 ~ 12270756 (+) True AMCG00001019
AMCG00001017 mRNA downstream 125890 12275185 ~ 12276967 (+) True AMCG00001017
TU160309 other upstream 130305 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 1987543 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3521535 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10445483 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10541091 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 3020616 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3259817 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 5873765 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6396598 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 6405856 18555151 ~ 18558174 (+) False G129442

Expression Profile