RNA id: AMCG00001014


Basic Information

Item Value
RNA id AMCG00001014
length 1731
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00001014
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12128565 ~ 12141472 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGTACGAAAGTTCAGCATTGCATTTCACTTGTTATTAACACACAACTTTTCCctagaaagaaatacaattatgtagcatattttctgtattcttGCAGAACGAAACATCCCAGTGAGGATGAGACGCCAATGGGCACTGTCCCTGGCATCCCTGGCAAAGAGGAGCCTACAGTGCAGACTGAGCAGCAGCAGACCTCCTGCCCCACTTGGTGGTAGAATATTAACCAGCCCCAATGAAGTGTTCCAGCATAATATGTGggaTCACGTTCAGTGGTCAGAGGAAGATGAAGAAAATGCACGACAGAAAGCTGAAGAAAATTCCAGTGTGCGCATTCCTCTGGACGAGCAAgTGAAATACGATAGAGACGCTTGTAAATACTGGGATGGATTTTACGAAACCCATCAGAACAAGTTCTTCAAAGATCGTAACTGGCTGTTCAGAGAGTTTCCTGAGATTCTGTCTGGACGGTCTAGTAACGGGGCTGGGAAGGAAGGATGCTGTCACTCAGCAGCAGCTTCCTCTGCACGATCATATGTCTCTGACAGCACAGCCCCGCTGACAGGGCATAGCGAGTGGCTGTCTACACCaggctgcagacacacagagcgcAGCAAGGAAGGGGGAGTGGAGAGCCACAGCTTGTGTGGAGAGCCtgggagagagcaggagagtgGAGGGTGGACTGATACATTCCCAGGAAGTCAGGCAGCGTTCAGGATCCTTGAGGTAGGATGTGGGGCTGGAAACAGTGTTTTTCCCATTGTAAATTCCATTAAAGACACAGGAACATTCCTGTACTGCTGTGATTTCTCACCGCGAGCTGTCGAGCTGGTAAAGGCCCACCCAAGCTACAGCTCAGTTCTGTGTCATGTCTTTGTGCATGATGTCTGCGATGAAGCCGCCACCTTCCCATTTCCGCACATGAGCATAGACATCATTCTCGTTGTCTTCGTGCTATCGTCCATTCACCCTGAGCAAATGCAAGGAGTTGTAAACAGATTGACCCGGTTATTGAAGCCAGGGGGAATACTGCTATTCAGGGATTATGGCAGATACGACATGTCACAACTACGATTCAAAAGAGGACGCTGCTTGTTTGAAAACTTCTATGCCCGGGGAGATGGTACTTGCGTGTACTTTTTTACaaaagccGAAGTTCACAGTTTATTTGAGAGCGCTGGTTTAAAAGAAATCCAAAACTTGGAGGACAGGCGGCTGCAAGTGAACAGGAGGAAAGGAGTGGTGATGCACCGAGTCTGGATGCAAAGCAAGTATCAGAAACCACTGGAGATGGACATTTGTAAAGATGACTTTCCATAGCTGCATAAAACAGTGTTGACTTAAGCAGGGATTGAGTTCTGGGGGTCTCTTGCATCATTACTCAGACTCTTATGGATGTGATAAAGACTTATCTAAACAAGCAGAATCAGATGTGGCAGAATCCATCGACAGGGCAACACATCCAAGTACAATAAAATGTGCCTGTCAGAAGAATATCCACCGCAGGAATAAATGGTGGCCTGTTGCCACTTCAGCCTGCTGTCTCCCATGCCCTATATCTGCatcaaacattttgaaaatagcTTTAAGTCAAGGCTAATATTCAATATGGgtgaaatgtgtatgtgtgtgagatggctcaatgcaaataaaagagtaggaaaaggaaaatggagCTCACGGTGTAactagttgtttttttcagattgcTGAAATCCATCACCTCC

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160341 lncRNA downstream 216743 11908986 ~ 11911822 (-) True G127899
TU160162 lncRNA downstream 510460 11615457 ~ 11618105 (-) True G127747
TU160157 lncRNA downstream 516953 11610243 ~ 11611612 (-) True G127743
TU160156 lncRNA downstream 518935 11609271 ~ 11609630 (-) True G127742
TU160154 lncRNA downstream 522389 11605804 ~ 11606176 (-) True G127740
TU160449 lncRNA upstream 13036 12154508 ~ 12158483 (-) True G127976
TU160530 lncRNA upstream 217087 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA upstream 217087 12358559 ~ 12387584 (-) True G128045
TU160562 lncRNA upstream 351706 12493178 ~ 12495215 (-) True G128070
TU160632 lncRNA upstream 555705 12697177 ~ 12697668 (-) False AMCG00001041
AMCG00001015 mRNA downstream 17965 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001000 mRNA downstream 281405 11844137 ~ 11847160 (-) True AMCG00001000
AMCG00000998 mRNA downstream 313515 11811434 ~ 11815050 (-) True AMCG00000998
AMCG00000999 mRNA downstream 326112 11795399 ~ 11802453 (-) True AMCG00000999
AMCG00000991 mRNA downstream 382384 11741361 ~ 11746181 (-) True AMCG00000991
AMCG00001021 mRNA upstream 51727 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001020 mRNA upstream 144695 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001024 mRNA upstream 259038 12400510 ~ 12415391 (-) True AMCG00001024
AMCG00001035 mRNA upstream 394346 12535818 ~ 12544417 (-) True AMCG00001035
AMCG00001033 mRNA upstream 402971 12544443 ~ 12601997 (-) True AMCG00001033
TU159975 other downstream 1428217 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 1850354 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2709240 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4482843 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5394748 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 590712 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 1215511 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2451227 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 3037769 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 3222595 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile