RNA id: AMCG00001015


Basic Information

Item Value
RNA id AMCG00001015
length 3603
RNA type mRNA
GC content 0.43
exon number 20
gene id AMCG00001015
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12094466 ~ 12110600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTGCAATGGATGAACTACACAGCCTTGATCCCAGGCGACAAGAGCTGTTGGAAGCCCGGTTCACTGGTGGTGTGAGTGGCAGCACGGGGGGCAGCACGGGCAGCGGCAGTGCAGGAGCTAAAgCCTTGACAAATAATGAATGTTCAAACCACAGTTTTGGAAGTCTTGGTTCCTTAAGTGATAAGGAATCAGAGGGCTCTGATGTGAAGAGAGGCAGCTCCCCTGCGTATTCAACCCCTGAAAAAAAGCTCTCTGAATCCtcgagagggagaaagaggaaaGCAGAAAATCAGACTGAGAGCAACCAAGGTGACAAATTATATAGATGTACATTAAAGTTCCAGGGAGGGAACGGGTCCAGTCCGGTGAGAGGAGTCCCTCCGGTTATCCGCTCGCCTCAGAACTCACATTCACATTCCACCCCCGGCTCCACTATTAGACAAAATAGCCCATCTCCAACTAGTCTGTCTTTTGGGGACCATGTTGTAGTACATCCAAAACAGTTGTCCATTAAATGTGTTCAGACTGATCTTACGGTGCTCAAGTTAGCTGCCCTTGAAAGTAATAAGAATCTGGACCTAGAGAAAAAAGAAGGGAGAATAGATGATTTGCTTCGGGCAAACTGTGATCTCAGGAGACAAATAGATGAACAGCAGAAATTACTTGAAAAGTACAAGGAACgcttaaataaatgcatcaccATGAGCAAGAAGTTACTTATTGAAAAGaGTACACAGGAGAAGCAGGCGTGCCGGGAGAAAAGCATGCAGGACAGATTGCGGCTTGGCCATTTCACCACAGTTCGGCATGGGGCCTCCTTCACAGAACAGTGGACAGATGGCTTTGCATTTCAGAATCTTGTAAAGCAGCAAGAATGGATAAATCAGCAGAGAGAAGAAATTGAAAGGCAGAGAAAACTGTTGGCCAAGAGGAAACCTCCGACAACCAACAACTCTCAGACCCCGACCATGAACTCTGAGCCAAAGCAACGGAAAACCAAGGCAGTCAATGGAGCCGACAATGATCCATTTCTCAAACCTAGCCTACCTCAGCTGTTGACTGTAGCTGAGTACCATGAACAGGAAGAAATATTCAAGCTTCGACTAGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAAGCTGAACTTGAACGTCTGGAAAGAGTACGGAATCTGCACATACGGGAACTGAAGagaataaataatgaagatAACTCGCAgtTTAAAGATCATCCAACTTTGAACGAGAGATATCTATTATTGCATCTTCTGGGAAGAGGAGGCTTTAGTGAAGTATATAAgGCCTTTGATTTGTTTGAGCAACGGTATGCTGCAGTGAAGATCCACCAGctcaataaaaactggagagaagagaagaaagaaaactacCACAAGCATGCCTGTCGAGAATATAGAATACACAAGGAGTTGGATCACCCCAGGATAGTGAAATTGTATGACTATTTCTCGCTCGATACAGACACGTTTTGTACAGTGTTAGAATACTGTGAAGGCAATGACTTGGACTTCTACTTGAAACAGCATAAGCTAATGTCTGAAAAAGAAGCCAGGTCAATTGTCATGCAGATTGTGAATGCACTACGATATCTGAATGAAATCAAGCCACCTATCATACACTACGATCTCAAGCCCGGGAACATCCTCCTTGTTGATGGGACTGCTTGTGGCGAGATCAAAATCACAGACTTTGGTTTGTCCAAAATCATGGACGATGACAATTATGGTGTAGATGGAATGGATTTGACATCACAGGGAGCAGGCACCTattgGTACTTGCCTCCTGAATGTTTTGTAGTTGGCAAAGAACCCCCCAAGATTTCCAACAAGGTTGATGTCTGGTCTGTCGGAgtcatttttttccagtgtcTTTATGGAAGAAAGccATTCGGCCACAATCAGTCCCAGCAGGATATCTTGCAGGAGAACACAATACTAAAAGCTACAGAAGTTCAGTTTCCTGTCAAGCCAGTTGTTAGTAATGAAGCAAAGGCCTTTATAAGACGCTGCCTGGCATACCGAAAGGAGGACCGGTTCGACGTTCATCAGCTGGCCAGTGATTCCTACCTGCTTCCTCACATGAGGAGGTCAAATTCTTCAGGGAATCTGCACATGGGGGGCTCGGTCCCTCCCGGGCCTCCGTCTTCGAGTATCATTTCCTACTGAGGATCTGTGCCGACTGAAGTCCGGCGTGGTGTTTTGAGCAGCTTCCTCCTACAGGACCTGGAAAGTGTTAAAGCAAGCATCACCTGTGCGTGTATGACCCGTTTGGGCCCGTGTCAGCTGCTTTGTGATTGGAGAGGAACGGCACCGCACTGGCTCTCCGCTTGGGCTGTACTGACATAGAGTTAAGGGCCTTAGCAAGGTAATGAATTATAGAGCACTGCGACAGAGTAGCCTGAAACGGGACTGGTAACCGAGTACTGTTACTGGTTGGCTGAATAGTGTCCGATCTGGCACAAACACTTGACACAGGAGGCAAAAGGGAGAAATTGCAGCctgctgttttgatttaatgaaaTTTGTGCCTGCCTGGACATGAATAATAGAACTACTATACCTGTATTTAAAGAGCTGTTGGTCTTTTTAAATTCTGATCctgtagtgtttgttttaacatcTCAGCAGTTGCATTCCTGTTGGTTTCTGTAAAGCGTTTGCTTTAAATTTTCCTTCTCACCCTTTTTGTTAAACGACCATGGGAATTTTCTGTTACAATGTGAGTGTGTGGCTACAGCTGGCATTATTGATATCCAGGCAGGAGCATGTTTGCAGAATGCACAGAAAGTAACCAAATGTAGACAAACTGCAATGTATAGTATCCTATGCaggatgatttaaaaaatcccTCTTagaaaaattgtatatttattgtacagATGTCAATTTCAGTTATTCTTAAATTTCAGCAGTTTAATTTCTGTacaaagtgttatttttattttttttttcttactggaaattgtcatttttatgtCTCCTGGAGCATTTTCATTTGCTGCTATTGATGTTGCTTTTACTTTTTGATAAGGCTGTATGATCTACTTGAGGTACAAGTTGTACAGttcagttaaaagaaaaaaataatagttacAAGAAAATCAAGGCATGTAATAACTAATTTGTTAGGACACAATTCTTAAAAAGTAAGAGGCCATCGTGCTTTTTTTGGCAATTAATAGGCTGTTATGGTGTCTGTTCTAGGTGGTCGTCCCTATAGAGGCGGCTCTGTGCTGCCTGAGGGGATGATCTTGCTGTAGATTAAAGGGTGTCAGGCACCTCCTCTTCAGACTGACACTAATAAggtttaatattttgttcttaatgTGCTACAAAGCCATTGCTGTGAAATTACAAGAACTGCCTTGTCAGTACAATCCAGTAACTCTGTACATGGTCTGTCTGTTCTGTACATTACCCTGGTCAATGTTATGTCCACGATACTGAATGAATGCTTGTTTGTAATTTCTGCAAAGGAAAACCTGTAACTACAGGTTTCACCTCAATGTTCAGAAGTTAAGCTTTTGCTAATGTTTTTGATGTTgcaggccttttttttttccNNNNNNNNNNttttttttttt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08864 TLK; tousled-like kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160341 lncRNA downstream 182644 11908986 ~ 11911822 (-) True G127899
TU160162 lncRNA downstream 476361 11615457 ~ 11618105 (-) True G127747
TU160157 lncRNA downstream 482854 11610243 ~ 11611612 (-) True G127743
TU160156 lncRNA downstream 484836 11609271 ~ 11609630 (-) True G127742
TU160154 lncRNA downstream 488290 11605804 ~ 11606176 (-) True G127740
TU160449 lncRNA upstream 43908 12154508 ~ 12158483 (-) True G127976
TU160530 lncRNA upstream 247959 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA upstream 247959 12358559 ~ 12387584 (-) True G128045
TU160562 lncRNA upstream 382578 12493178 ~ 12495215 (-) True G128070
TU160632 lncRNA upstream 586577 12697177 ~ 12697668 (-) False AMCG00001041
AMCG00001000 mRNA downstream 247306 11844137 ~ 11847160 (-) True AMCG00001000
AMCG00000998 mRNA downstream 279416 11811434 ~ 11815050 (-) True AMCG00000998
AMCG00000999 mRNA downstream 292013 11795399 ~ 11802453 (-) True AMCG00000999
AMCG00000991 mRNA downstream 348285 11741361 ~ 11746181 (-) True AMCG00000991
AMCG00000992 mRNA downstream 360826 11675086 ~ 11733640 (-) True AMCG00000992
AMCG00001014 mRNA upstream 17965 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001021 mRNA upstream 82599 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001020 mRNA upstream 175567 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001024 mRNA upstream 289910 12400510 ~ 12415391 (-) True AMCG00001024
AMCG00001035 mRNA upstream 425218 12535818 ~ 12544417 (-) True AMCG00001035
TU159975 other downstream 1394118 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 1816255 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2675141 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4448744 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5360649 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 621584 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 1246383 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2482099 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 3068641 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 3253467 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049866 True 3496 mRNA 0.47 20 NC_007114.7 19687217 ~ 19717934 (+)