RNA id: AMCG00001020


Basic Information

Item Value
RNA id AMCG00001020
length 825
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00001020
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12286167 ~ 12287617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGGAGTCTTTGACAGTCTAGCTGCAGATATGCATGCCAACCAGATTACCTCCAACAACTACCACAGCATGCACAAATCCCAGGAGTCGCCAACTCTGCCGGTGTCCACGGCCACGGACAGCAGCTACTACAACAACCAGCAGCCCGGACACTGTGCAGGGTCGCCCTATGGACAGCTCGGGTCTTATCAGTACCATCCCAATGGCATGAGCAATGTCCCGTACAATGCCAAATCTTACGACCTCGGTTTCAGCACCTCGTATAGCTCATACGGCCCCTATGGTTCCAGTTCTTCACCGACCCACACGGATGCAGAGAAGGAAGAAGGAGAGCCCGAGATTAGGATGGTGAACGGCAAGCCAAAGAAAGTGAGGAAACCTCGGACCATTTACTCCAGTTTCCAGCTGGCAGCTCTGCAGAGACGCTTCCAAAAGACACAGTACTTGGCTTTACCTGAAAGAGCCGAGCTGGCTGCTTCCTTAGGCCTTACACAAACTCAGgtgAAAATCTGGTTTCAAAACCGACGATCAAAGTTCAAGAAGTTGTGGAAGAGTGGCGAGATCCCCCCGGAGCAGCACGCCGCCGCCAGCGACTCTCCGCCCTGCACGTCCCCGCCCGCCACGGCCGCCGCCTGGGACTTTCCGCACAACCAGAGAATGAACAGTGTCCCCTCCAGCCTGCCCCAAAGCAACAGCCCCCCAAACACGACTGCCCCCTCTTTCCTGGCCAACTATTCCTGGTACCCAACCTCCAACTCAGCGACGCATCTGCAGCCCAATCCTCTATTACAGCATCACCACAGCGCGCCGGCAATATTTTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160449 lncRNA downstream 127684 12154508 ~ 12158483 (-) True G127976
TU160341 lncRNA downstream 374345 11908986 ~ 11911822 (-) True G127899
TU160162 lncRNA downstream 668062 11615457 ~ 11618105 (-) True G127747
TU160157 lncRNA downstream 674555 11610243 ~ 11611612 (-) True G127743
TU160156 lncRNA downstream 676537 11609271 ~ 11609630 (-) True G127742
TU160530 lncRNA upstream 70942 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA upstream 70942 12358559 ~ 12387584 (-) True G128045
TU160562 lncRNA upstream 205561 12493178 ~ 12495215 (-) True G128070
TU160632 lncRNA upstream 409560 12697177 ~ 12697668 (-) False AMCG00001041
TU160682 lncRNA upstream 438077 12725694 ~ 12731187 (-) False AMCG00001039
AMCG00001021 mRNA downstream 75259 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001014 mRNA downstream 144695 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001015 mRNA downstream 175567 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001000 mRNA downstream 439007 11844137 ~ 11847160 (-) True AMCG00001000
AMCG00000998 mRNA downstream 471117 11811434 ~ 11815050 (-) True AMCG00000998
AMCG00001024 mRNA upstream 112893 12400510 ~ 12415391 (-) True AMCG00001024
AMCG00001035 mRNA upstream 248201 12535818 ~ 12544417 (-) True AMCG00001035
AMCG00001033 mRNA upstream 256826 12544443 ~ 12601997 (-) True AMCG00001033
AMCG00001031 mRNA upstream 318745 12606362 ~ 12617955 (-) True AMCG00001031
AMCG00001034 mRNA upstream 349127 12636744 ~ 12641982 (-) True AMCG00001034
TU159975 other downstream 1585819 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2007956 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2866842 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4640445 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5552350 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 444567 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 1069366 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2305082 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2891624 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 3076450 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile