RNA id: AMCG00001021


Basic Information

Item Value
RNA id AMCG00001021
length 1749
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00001021
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12193199 ~ 12210908 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTAGTGCATGCAAGTGTGGAGAAGGATGGGGAACATTACATGACCCCTGGAGATTTTGTGCAGAAATACATGGGACTGCACACCCAACCACATCACAACCCCAAGACGGTGCAGCTCATAGCTGGAGTGGCTGATACCACTAAAGATGGGTTGATCTCCTACCAAGAGTTTCTGGCCTTTGAGTCCGTTCTCTGTGCCCCTGATGCCATGTTTATTGTAGCTTTTCAGTTGTTTGACAAGAATGGCACTGGAGATGTTTCATTTGAGAATGTCAAAGATATCTTTGGACAGACCGTAATTCACCACCATATCCCTTTCAATTGGGATTGTGAGTTCATTAGACTTCACTTTGGCCATGACCGAAAGAAACACCTGAGCTACTCTGAGTTCACCCAGTTCTTGCAGGAGCTGCAACTGGAGCATGCCAGGCAGGCTTTTGCCCAGAAGGACAAATCCAAGAGTGGCTCCATCACAGCTTTAGATTTCAGTGACATCATGGCCACCATTCGCTCCTACATGCTAACTCCCTTTGTGGAAGAGAACCTTGTGCGGCTGAATTTGGCAGACATTGAGCGAATAGCACCGCTGGAGGAGGGAGCCCTGCCCTACAACCTGGCGGAGACCCAGAGACAGcaAGCTTACGGTGAAGCCGGCAGGCCTATCTGGCTCCAGGCTGCAGAGTCTGCTTACAGGTTCTCTCTGGGCTCAATTGCCGGAGCCACGGGGGCGACCGCGGTGTACCCCATCGACCTGGTGAAGACGCGGATGCAGAACCAGCGCTCCACCGGGTCCTTCGTAGGTGAACTGATGTACAAGAATAGCTTCGACTGTGCCAAGAAGGTCCTGAGATACGAGGGCTTCTTCGGCCTCTACAGAGgtCTTCTGCCACAGCTTGTAGGTGTTGCTCCTGAAAAAGCTATTAAACTTACTGTGAATGATTTTGTGAGGGACAAGTTCACCCAGAAAGATGGCTCCATCCCACTTTTTGCAGAAATCATGGCTGGTGGATGCGCGGGAGGCTCCCAGGTGATCTTCACTAACCCCCTGGAGATCGTGAAGATCCGCCTGCAGGTGGCGGGAGAGATCACCACCGGGCCCAGAGTGAGCGCACTCAGTGTTGTGCGGGACCTGGGCTTCTTTGGCCTCTACAAGGGTGCAAAAGCCTGCTTCCTGCGTGACATCCCGTTCTCTGCGATCTACTTCCCCGTCTACGCTCACACCAAGACACAACTGGCTGATGAGAATGGCAGGCTGGGGGCCCTTCAGCTGCTGACGGCTGGTGCCATCGCAGGTATTCCTGCTGCCTCTCTGGTCACCCCTGCTGATGTCATTAAGACTAGACTTCAGGTGGCCGCCCGCGCTGGCCAGACAACCTACTCCGGAGTCATTGACTGCTTCAGAAAAATCCTCCAGGAAGAGGGATTCCGGGCGCTTTGGAAAGGAGCGGGAGCCCGTGTCTGCAGGTCCTCGCCGCAGTTCGGTGTTACTCTGGTGACCTATGAACTACTGCAGAGGTGGTTCTACATTGATTTCGGAGGAAGTCGGCCCATGGGCACAGAGCCCACACCCAAGTCCAGGATCCAAGAGCTTCCTCCCGCCAGCCCTGACCACGTTGGAGGATACAAACTAGCCGCCGCCACGTTCGCAGGAATAGAGAATAAGTTTGGCCTTTATCTGCCCAAATTCAAATCTTCAGGTGTTGTTTCAATCCATCCAGCATCCTCTAAGGAATCTCAGGGGTCTTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K15105 SLC25A12_13, AGC; solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160449 lncRNA downstream 34716 12154508 ~ 12158483 (-) True G127976
TU160341 lncRNA downstream 281377 11908986 ~ 11911822 (-) True G127899
TU160162 lncRNA downstream 575094 11615457 ~ 11618105 (-) True G127747
TU160157 lncRNA downstream 581587 11610243 ~ 11611612 (-) True G127743
TU160156 lncRNA downstream 583569 11609271 ~ 11609630 (-) True G127742
TU160530 lncRNA upstream 147651 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA upstream 147651 12358559 ~ 12387584 (-) True G128045
TU160562 lncRNA upstream 282270 12493178 ~ 12495215 (-) True G128070
TU160632 lncRNA upstream 486269 12697177 ~ 12697668 (-) False AMCG00001041
TU160682 lncRNA upstream 514786 12725694 ~ 12731187 (-) False AMCG00001039
AMCG00001014 mRNA downstream 51727 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001015 mRNA downstream 82599 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001000 mRNA downstream 346039 11844137 ~ 11847160 (-) True AMCG00001000
AMCG00000998 mRNA downstream 378149 11811434 ~ 11815050 (-) True AMCG00000998
AMCG00000999 mRNA downstream 390746 11795399 ~ 11802453 (-) True AMCG00000999
AMCG00001020 mRNA upstream 75259 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001024 mRNA upstream 189602 12400510 ~ 12415391 (-) True AMCG00001024
AMCG00001035 mRNA upstream 324910 12535818 ~ 12544417 (-) True AMCG00001035
AMCG00001033 mRNA upstream 333535 12544443 ~ 12601997 (-) True AMCG00001033
AMCG00001031 mRNA upstream 395454 12606362 ~ 12617955 (-) True AMCG00001031
TU159975 other downstream 1492851 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 1914988 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2773874 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4547477 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5459382 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 521276 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 1146075 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2381791 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2968333 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 3153159 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile