RNA id: AMCG00001024


Basic Information

Item Value
RNA id AMCG00001024
length 2421
RNA type mRNA
GC content 0.54
exon number 16
gene id AMCG00001024
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12400510 ~ 12415391 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTTCAGTACCTTCTCCAATGAGGAGTATGACCGGCGCAATGATGAGGTGGACCCTGTGGCGGCCTCTGCAGAGTACGAGCTGGAGAAGAGAGTGGAGAAGATGGATGTGTTCCCGGTGGAGATTGAAAAGGGAGACAATGGGCTGGGAATCAGTATAATAGGAATGGGAGTGGGGGCTGACCAGGGCTTGGAGAAGCTCGGCATATTTGTGAAGACCATCACTGAGGGCGGAGCAGCGGAAAGAGACGGACGGATCGAGGTCAATGACCAGATAGTGGAGGTGGACAGCATAAGTCTCGTGGGTGTCACACAGCTGTTTGCTGCAACGATTCTGAAGAATACTAAAGGCACTGTCAGTTTCCTGATTGGCCGAGAGAAGCCGGGAACGCATAGTGAGGTGGCACGTCTCATTAGCGAGACTCTGGAGCAGGAGAAGAGCCAGCAGCGGCTGGACGACCCTTATGACCAGTCCACCGAGGAGGATGAGCATTACGAAGacgaggagagagaggagcaggAGGTGGTGTTAGGATCAAGCTTCTCGGGGAGGTCTGTCGAAGTGTTTGAACTTCCTGAGAACGAAGAGATGTTTCTCCCATCTAACATGGACTCCACACAGCTGGGTTTGAAGTTCAAAGAGCTGCAACTGAAGCATACTATAACAACAGCAGAACTCAGCCAAGTAAAGGAAAAGTtgaaagagacagaggaagacaGAGAAGAGTGGCAATCGAAGCAAGCTCAGTTACAGGAAAGCATTGAGGAAAACaaggagaaaattaaaaagttggAAGCGTATTGGCTGGAGGCACAGACGCTTTGCAAAACGGTCAATGAGCACCTTAAGGAAACTCAGAGTCAGTATGATGCACTGGATAAGAAATACAACAAGGCCAAGAAGCTGCTCAAGGATTATCAACAGAAGGAAATCGACTTTGTGAAGAAGGAAGAGGAGCTGAAGAGAGTGCTGGACGAGAAGGACCGAGCATACCAGGAGGAGCTGAGGAAGCTGCAGGAGAAGGTAGCGGATCTGGAGGCGGGAGCCCTGCCGGCCCAGCAGACTGCAGCCCTGGCTAGACTTTCCCCTCCCGGGGACAGGAGGGCCAGTAGAGGGCCAGCCGGGAGCACAGAGTACCTGCAGCGAGAACCAGGCCTGCTGGAGGAGTCGGTGAAAAAAGCTTGGTCTGTGGACGCGTTACTATCCGAGACAGCCCTGGATGAGGTTGTTCCAGAGACCGAGAGGTTGGACACCAGCGCCCACCGCGCCAAAGCTCAGCTCGCCCTCAAGGCCAAACGGCAGCCACCAACTCGGACCAAATTGAGAGAGACGCTCGGAACTACCCCGGGCCAGGAGGAGAACGAGGTGAGTGAGGCTCAGCAGTCAGACTCTCGGGGGGCTGGAAACGAAGAGATGTCTGCAAAGCCCATTCAGGCCAGCTTGTCGCTGCCTGTAAATGTATCGTATCCCGCGGACGGACAAAAGAGTGAGAAACTCGAGACGGTGGGAAGTGTCAAGAGTAGAGCCGAACTGGGCAACAGCCCCCTTCCCCCggccccctcctctcctctccacagAGCCAGCAGCGAGAGCGCTGGCAGCCCGGGACTCTCTCCTTCCAAAGAATCGGCCTTCCCACACTCCCCCTCCGGCTTCCTCCGCAACGTCAAGAAGAGGGAGTCCAAGGGCAAGGGCAAGGAGCCTAAAGATGACAAATCAGAAGCAAATGATAGTTCATCTTCAGGGAAACCCAAAAGAAGATTCCCTGACTTTGGTGGTCTTCGGAAGTCTGGtggcaaaggaaaaaaacaacatgacaaaGAGGCCATGAGGGGTTCCCTGGACAGCAGAGACAAggacagagagaaggaaagagaccCCTCGTCATCCAGCAGCAGCCTGCCTTACACCGCCAGCGAGAGCAATGACCAACTCCAGGACAGGAGCAAGGCTAAGAGTTTGTCTGTCATAGATGATTCAAACCCTGGCAGCCCCAGTTCTGAGCTGACAGGGCTAGTAGCCGAGCCAAACCTATCAGGGCGCTCACATACTTTAACCTTCTCTTCCAATGAGACTCTCGATGATGACCCAGTCCCACTAGGGAAGGAGTACCAGTGGCAGAACAGGCCCGTCTCCGATTGGACCACCCAGCAGGTCTGCCACTGGCTGATGGGCATGAACATGGACCAGTACACCCCCGAGTTCACAGCCAGAGGCGTGGACGGACACCAGCTGATGAATCTCGACAGCGACAGGCTGAAGGCCATCGGTGTTTCAAGTCAGAATGACCGAGCCACCATTAAAAAGAAGCTCAAAGAGATGAAGAAAACCCAGGAGAAACTGGAGAAGCAgcgagagaagagagagaaggaggccAGGCGCAGTGGGAAACTACCAGTGAATGTAGACTCGACCTGCTGA

Function

GO: NA

KEGG:

id description
K17551 PPP1R9; neurabin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160530 lncRNA downstream 12926 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA downstream 12926 12358559 ~ 12387584 (-) True G128045
TU160449 lncRNA downstream 242027 12154508 ~ 12158483 (-) True G127976
TU160341 lncRNA downstream 488688 11908986 ~ 11911822 (-) True G127899
TU160162 lncRNA downstream 782405 11615457 ~ 11618105 (-) True G127747
TU160562 lncRNA upstream 77787 12493178 ~ 12495215 (-) True G128070
TU160632 lncRNA upstream 281786 12697177 ~ 12697668 (-) False AMCG00001041
TU160682 lncRNA upstream 310303 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA upstream 310303 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA upstream 310303 12725694 ~ 12731187 (-) True AMCG00001039
AMCG00001020 mRNA downstream 112893 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001021 mRNA downstream 189602 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001014 mRNA downstream 259038 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001015 mRNA downstream 289910 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001000 mRNA downstream 553350 11844137 ~ 11847160 (-) True AMCG00001000
AMCG00001035 mRNA upstream 120427 12535818 ~ 12544417 (-) True AMCG00001035
AMCG00001033 mRNA upstream 129052 12544443 ~ 12601997 (-) True AMCG00001033
AMCG00001031 mRNA upstream 190971 12606362 ~ 12617955 (-) True AMCG00001031
AMCG00001034 mRNA upstream 221353 12636744 ~ 12641982 (-) True AMCG00001034
AMCG00001032 mRNA upstream 237220 12652611 ~ 12658389 (-) True AMCG00001032
TU159975 other downstream 1700162 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2122299 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 2981185 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4754788 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5666693 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 316793 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 941592 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2177308 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2763850 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2948676 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile