RNA id: AMCG00001025


Basic Information

Item Value
RNA id AMCG00001025
length 2423
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00001025
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12529789 ~ 12536066 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCACCCTGCACACGCAGCAGCAGCCGGAGCTGAAACCAGTCGCAGCAAAAccagtaaaataagaaaatgcgTCGCAGTCGTGCAAAGGCAGTCGTGCCATTGGTCAGGATGAATCTGAGAAGCTTCCGCACTGTGCCCCTGGTGCCCATGGAGACCTCCTCTTCAGATGACAGCTGTGACAGTTTTGGATCGGATGGTTATGCCAATACAAAGAAGACAACCTTAAAACCAGCAAAAGTGCCAGCTGGCAAGCTGAAGATCTTTAACGAAGCCCCGGAGGAGGAGTCTCTCTGCGGGTTTTCGGAAGCCACGTTCAGCGATGTTATGGGTGCTATGACGGTGAACTCGGACGAAGAACACGCCTCGCCCCGCAGGAGGCGAAGGGGATCGCAGCCCTTAAAGGTGGCCATGAAATTCCCTGCCAGGAAGAAGACACCCACAAAACCTCTCCACCAGCAAAAAAACGAGATGGGTTTGGATTCAGAGTCAGATGACGAAAAAGGTGCCAACTTTATGACGAAGAGGGCCATCAATATAAAGGAGAACAAAGCCATGCTTGCAAAGTTAATGTCTGAGCTGAAGGGCGTGTCAGGACTCTTCCCCAGGAGGATGACTCTGCCTTCTGCAAGTTCACCCCGACGGATGCCGCGCCGCTCTCTGGGATCAGGCCCCTGCAGGAGAAACCCTGAGCGCAGCTCCCGTCCCCACACCCGCTCCCGCTCCCTCATCGAgggcccccccagccccccaccagaggaggagcaggaggacaAGTACAGCCTGGTGCGCAGGAGGGAGGCGGATGAGGATTATGAAGAGAGAGCGCCGCGGCGCAGGAGCTACACCGGAGCTCTGGTCATCCCTCACAGGGTGCGTCCCGTGGAGGAGATCACGGAGAGCGAGCTGGACAATATCTGCTTCAACGTCAGGGAGAAGGTGTATAACCGGTCGACTgGATCGACTTGCCACCAGTGTCGCCAAAAAACAACCGACACCAAAACGAATTGCCGCAATCCGGAGTGTGTGGGGGTGAGGGGGCAGTTCTGTGGGCCCTGTCTCCGAAACCGCTACGGGGAGGAGGTTCGAGATGCCCTACTGGATGCGCGAGAAGGGCGTTGTGCCACTGGGGTGCTGGTCTACTTGGCAAAATACCATGGCTATGACAATGTGCATGCCTACTTGAAAAGCCTCAAAcgagagctggagctggaggaggaaaACTGAACGGCCGCAGCAGCAGCCTGGCTTTGGAAAGCGTCGCCCTGCTGTTTCCGGATCAGGCCTTTTCATTGTTTGGATCTGGGAAATTCTTACTGTGGCTGTATTTGCACACATTTAgatggttttgttgttgctctgGAGTACAGTTAGAGAGATGGGGGAAAGCTTTTATGTTAAGTAAATGcatgtcattgtttttatacAGAAGTGGGGAAGGGCAAGGGGTGTATATGGAGGCAGTGGCATTAGATACAGCGACAGTGATTTCTCATTTCTAAATGAAGGGGGTGAATTCGATCCCCATTAAGCTTTGCTTTCATAAGGAGTCGAAGTGATTCTACCTGTACACAATACCCAAACTGATGTGGTTTAAATAGCTcctctgcttttgttttctgattacattgttttaaatgtataaagttCTATTTGATCAGATGtgaaattttaaattttatttgcCATGCAAAACCAGGGCACTAAAATTTGGCCTGTGAAATTTGGGTTGTGCTTACTGCATCTATTAATGCAGTGTTCCTTTAATTTAGATACCATGTATTTGTCTGAATCTTGTGCTTCCATTTTCCATCTTTCATAATCTCAACAGCAAggacttttttctttaataactTGTTTCTTTGCATATTTTTCAAGCTAAATCCACCCTTTTAATGCTTGGTTGATACAGCATTTACTTTTTGTTATAATCCTGTGATTTTCTTTCTGCTTAAAGAGCTTTGGCTTTTAGAtgtaacaaatgaaaatattacatGTACAAAAGTTGTTTCTCTatcaacatttttattcaatagGTGTATACCTTAAGATACTGACCAGTTTTaagtacacatttttttttgaagcacacaaaaaaaaataaacttgaattaAAACTACAGGTGTCGTCCAGTGTCTTATGTGAAATGTATGGTGGAATGGATTCGCTTGCCTTCACACGCTCAGGAGCAGCGCCACGCCCGCCAGAACCCACTTCGCCGGCCGTTCTTTTGTCTTCAGGCTAAACGTCCAAACATAGGTGGCACCTCTGAACTTGGTCTTGTACACCGGGCACTCGTAGATGTTCCTCGTCTCCTGCCTGTCGTTGGGAATGGCCCTGACGAACATCACAGGCATGATGGGCGTGAGCTCCTTCAGACGGGCCTCCGTGATGTTTCCGCCCTGCGTGTCCCATCTGGCACC

Function

GO: NA

KEGG:

id description
K23408 CDCA7, JPO1; cell division cycle-associated protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160510 lncRNA upstream 167637 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA upstream 167637 12360915 ~ 12362152 (+) False AMCG00001022
TU160371 lncRNA upstream 432926 12094141 ~ 12096863 (+) True G127924
TU160196 lncRNA upstream 787039 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 2084852 10442993 ~ 10444937 (+) True G127509
TU160571 lncRNA downstream 4015 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 69973 12606039 ~ 12655172 (+) True G128101
TU160610 lncRNA downstream 102919 12638985 ~ 12676174 (+) True G128107
TU160612 lncRNA downstream 102919 12638985 ~ 12639888 (+) False G128107
TU160703 lncRNA downstream 301585 12837651 ~ 12841008 (+) False G128171
AMCG00001028 mRNA upstream 685 12523818 ~ 12529104 (+) True AMCG00001028
AMCG00001027 mRNA upstream 11837 12497386 ~ 12517952 (+) True AMCG00001027
AMCG00001026 mRNA upstream 34572 12469940 ~ 12495217 (+) True AMCG00001026
AMCG00001029 mRNA upstream 74231 12444860 ~ 12455558 (+) True AMCG00001029
AMCG00001023 mRNA upstream 130646 12390337 ~ 12399143 (+) True AMCG00001023
AMCG00001036 mRNA downstream 152712 12688778 ~ 12690656 (+) True AMCG00001036
AMCG00001037 mRNA downstream 161153 12697219 ~ 12707783 (+) True AMCG00001037
AMCG00001047 mRNA downstream 276348 12812414 ~ 12813367 (+) True AMCG00001047
AMCG00001052 mRNA downstream 461046 12997112 ~ 12998946 (+) True AMCG00001052
AMCG00001050 mRNA downstream 466869 13002935 ~ 13004035 (+) True AMCG00001050
TU160309 other upstream 518364 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 2375602 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3909594 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10833542 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10929150 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 2633845 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 2873046 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 5486994 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6009827 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 6019085 18555151 ~ 18558174 (+) False G129442

Expression Profile