RNA id: AMCG00001031


Basic Information

Item Value
RNA id AMCG00001031
length 4019
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00001031
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12606362 ~ 12617955 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTGACAGCGGCTCCGGCCACTCCCGACGCGCGGAGTCGAGCCGGGCAGCCAATGGGCTGAGAGAAGAACGGCGGGACTTCCTGTGCGTGACGCAAAACTTCACCGTCAAGCCCGAGAAGCCCCACCTTTTGTGTTTCCCGCACCCGCCTGAAAAGCCTGTGAAACAAGAGGAAATGGCTGCCTTAGACGTGGACAGTAGTCAGAGCGACTATCTGCAGCACGGCGGCGGCGGAGGAAACCAGGACACTCAGCCGTCACCGCTCGCTCTGCTGGCAGCTACCTGCAGCAAGATCGGGTCGCCATCGCCAGAGGAGGATGGCTGTGCCGCCGCTGGCGTGcCTGGAGATCTCACTTCCATACAGTTGTCAGGGACCTCCAATAGATGGGAAGTCTTGACACCGACTGCGACAATAAAGGAGGAGCCGGGCCTAGTACAGATTCAAAATACGGGGATAGTAACGTCAAACGGACAGTATGTTCTTCCGATTCAGAATCTGCAAAACCAACAGATTTTTGTGACTTCAGGAACAGACACGTCTGCCAGTGCAGTGCCTAATATACAATACCAGGTGATCCCACAGCTCCAGACTGCAGACGGGCAACAGGTGCAGCTGGGCTTTTCGACCTCCACTGTGGATGGGACCGCTCTGGGTCAAGATGCCACAGGGCAGATACAGATCATGCCTGATGGGCATCAGAGCATAACCGTTGCTGGTACATCTTCCGCAGACATCCTCACCAACAGCCAGAACCTCATATCACAGACTGGGCACGTGCAGCACCCCGGGGGGCATGTCCAGATTCAAGGGGTATCCCTTGGCAGCTCCACCTACAACAACCAGGGTCAGGTTGTTACTAATGTGCCTGTTGGGTTGCCTGGAAATATTACCTTTGTACCGATTAACAGTGTCGATCTGGACTCGTTAGGGCTCTCGGGAGCAGCCCAGACTATAGCCACGGGGGTGACCTCTGATGGCCAGTTGATCATGACTGGCCAGCCCATGGACACCTCGGAGAACTCTGACAAGACTGGTGGTCAGATCTCCCAAACACTATCCTCGAATGATTCAAACACTAACCAAGACATGTACGTGCCAACAACGTCCTCCTCCCAGCTGCATGAAACCATTGACGGCACTGGGGTGTTGCAGCAAGCCACGTCTGGCTCGTCGGCCGGGGAGCAGGTTGACCCTTCCAGCCTTCAGGAAAACTACATCCAGACGGCTCTGTCCGACCAGAGCCAAGTGCAGAACATTCAGGTCTCCACAGCACAGTCCATCATCCAGCTGCAGCAGGTCCCCACGCACACCACCAGCGACGGCCAGATCGTCCACGGGATCCCCCAGCAGCAGGTCCAGGCGGGGCAGACCATCTCCACCCAGGCCCTGCAGAACTTGCAACTCCTCAACCCAGGGACTTTTTTGATACAGGCCCAGACAGTGACGCCTTCCGGGCAGATCCAGTGGCAGACTTTCCAGGTGCAGGGTGTCCAGAACCTGCAGAACCTCCAGCTTCCCAATGCTCCTGCCCAGCAGATCACCCTGGCCCCGGTGCAGACCCTGTCTTTAGGGCAGGGGGGCACGCTGGGCTCCAGTCCAGTCAGCATCAGCACCGGCCAGATCCCCAACCTCCAGACAGTCACAGTGAACTCTATAGGGTCGACTGGAATACAGTTTCAGCAGCAAGAAGACACGAGCAGTCCGGCAGATATCCAGATCAAGGAGGAGCCAGACTCGGAGGAGTGGCAGCTGGGCAGTGACTCCACCCTGAACACCAGTGACCTGTCCCACCTGCGGGTCCGGTTGGTGGACGAGGACACAGACCAGCAGAACCAAGAGGGCAAGCGGCTGAGACGGGTGGCCTGCACCTGTCCCAACTGCAAGGAGGCTGGCGGAAGAGGGTCTAATTTGGGAAAAAAGAAGCAGCACATTTGCCACATTCCTGGCTGTGGGAAAGTTTATGGGAAGACGTCACACCTGAGGGCCCACCTACGCTGGCATTCGGGCGAGCGCCCCTTTGTCTGCACTTGGATGTTCTGCGGCAAAAGGTTCACGCGTAGCGATGAGCTACAGAGGCACAGAAGAACACACACAGGTGAGAAGAAGTTTGTCTGCCCGGAATGTTCCAAACGTTTTATGCGGAGCGATCATCTTGCCAAGCATATTAAAACTCACCAGAACAAAAAAGGCATTAACTCGAGCAGTACAGTGATGGCGACAGTGGAAGCCACGTCGTCGTCTGATAACATTATTACAGCAGGGGGAACAACCCTAATCCTAACCAATATTCAACAGGGTTCAGTACAGGGCATCGGGACAGTGAACTCTACAAATGCCAGCGCTCAAGAGATTCTCTCCAACTCCGAAATCCCTTTACAGCTGGTCACAGTTTCAGCCAGTGAGGTGATGGAGTAACAGACAATGACATGAACTTGTTTATTGgtcgtgtttttttttgttttgtttttttcttgttttttatatatatatatattatattttaaaaaaataattatcagtTTATGTCCATTAGCAGTCTTTTTACGGAAGGGGCAAAAATTGACATTAATGTGGTTACAATACACACTGAAATGCCTTATTTTGTATCATACTCTGTAGTATAAATGGTGGAGTTGCATGTGGTTTTAGCTACTGTTCAATGTGTAATAGTtctgaaaaatgtttctgtaataTGAAAAGAATGGTACAGAAGAGAATTATGGGAGTTTCATCCTAAATCTATATTAAATGGGAAATTGTTGATGTGCATACTTTAAAGGTGGCCAAGGTAAGGAAGCATTCTGCCtcagattttattaaaacattaattaggctaatataaatcaaatgtcaGTCCACTCATCATATTTGCTGGCACAGTGTGTGCTCACAGCAGTCCAAATGTAatttcttcatttgaaatgtgtcattTCTTTATCCGACTCCTTCGTGTTGAAccagtttctttctttgtgtcaATGTTTTCACTCAATTTATGTCCTTCAATAGAGACTCAAACAGGGTTTAGTCAGAACTGTCAGCATTTAGAGTAATCCCACCTGATTCAATTCATCCTGAGGTATTTTGCAGaaggcaaaagaaaacaatcatgtaattaaaagttttgtatttttcttttctccttgtAAGTCTCCTGTTGATCTGATGTTTATTATGCATAACTTGcaaatcaagttttttttgAGCAAAAGCTATTTATAGTAGGCTTTACTTAGTAAACTGGTTTTGTTGTATCAAAAGCTcgttattttaattactttttaaatatgtataatatccAAATGTGTTACTTTTGTAAAACTTCATTTTCCAATGGAACTCAATTAAAGTCTGAATcctttctataaaaaaaaaaagccatgttAAAGGGTTGATTTGCcaaatttgattttattttcttaaggaCTTGCAATAATGTCAGATTACAAGGTAGCACACCCATTTTCTGCAGCATTCGTAGGCTGATCCATGTGGATTATTGTAGACGTAGATTTATCACATGATGATGGaccaaaagacaaaaataattatgcagCCGCCATTTCTAACATACTGTGTCAAGATAATTTATATGTCAGGGTCTTAAAATGACTTTTTGCTAAATTACCTGTGAAATGTTCCCCCCCACTGCTAGGTGATGGGAGTCCCTCTCGTTTGTGACCACGCTCCCATCATTGCAGGCAAAAACAATCCAGTGAAATGCCATCGTTCACTCCGTTCAAGAGAAAACCTATTTATTGTTAGAACTGTACGTTTACTAATCAACTGCAGTTTAATAAGTCTTTTTGTATAAACATTGTCTCATTTTTTTGATACTGCCCTGGAAATTGTGTGTAGGCTATGCACTCTTGCTCtgttaatatatgcatttgtctttttaatttttttttttatatatatatattcctatataatttgtttataatatatatatatatatgtttgtgtgcgtgcgtgcgtgtgtgtgtatgtatgtatatatatatatatatata

Function

GO: NA

KEGG:

id description
K09193 SP3; transcription factor Sp3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160562 lncRNA downstream 111147 12493178 ~ 12495215 (-) True G128070
TU160530 lncRNA downstream 218778 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA downstream 218778 12358559 ~ 12387584 (-) True G128045
TU160449 lncRNA downstream 447879 12154508 ~ 12158483 (-) True G127976
TU160341 lncRNA downstream 694540 11908986 ~ 11911822 (-) True G127899
TU160632 lncRNA upstream 79222 12697177 ~ 12697668 (-) False AMCG00001041
TU160682 lncRNA upstream 107739 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA upstream 107739 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA upstream 107739 12725694 ~ 12731187 (-) True AMCG00001039
TU160675 lncRNA upstream 146957 12764912 ~ 12810017 (-) True G128155
AMCG00001033 mRNA downstream 4365 12544443 ~ 12601997 (-) True AMCG00001033
AMCG00001035 mRNA downstream 61945 12535818 ~ 12544417 (-) True AMCG00001035
AMCG00001024 mRNA downstream 190971 12400510 ~ 12415391 (-) True AMCG00001024
AMCG00001020 mRNA downstream 318745 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001021 mRNA downstream 395454 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001034 mRNA upstream 18789 12636744 ~ 12641982 (-) True AMCG00001034
AMCG00001032 mRNA upstream 34656 12652611 ~ 12658389 (-) True AMCG00001032
AMCG00001030 mRNA upstream 58067 12676022 ~ 12679428 (-) True AMCG00001030
AMCG00001041 mRNA upstream 79607 12697562 ~ 12703910 (-) True AMCG00001041
AMCG00001040 mRNA upstream 87510 12705465 ~ 12721679 (-) True AMCG00001040
TU159975 other downstream 1906014 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2328151 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3187037 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4960640 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5872545 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 114229 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 739028 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 1974744 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2561286 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2746112 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024074 False 1906 mRNA 0.48 4 NC_007128.7 32365941 ~ 32370047 (-)