RNA id: AMCG00001035


Basic Information

Item Value
RNA id AMCG00001035
length 2010
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00001035
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12535818 ~ 12544417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGATCTCCCAAACGCTGGAAAAAAGTTGTTGAATCAGAGTGTCCGGAAAAAGAAAAGTTCCCTCAAGAGTGGAAGAGTAAAAGCTCCCTCCAGAAGCTGATAATGATGCGCGCACTGCGCCCCGACCGGATGACATATGCAGTGAGAAATTTTGTTGAAGAGAAGCTTGGAGCAAAATACACTGAAGTGCGCAAAACGGAGTTCGCAAAGTCATTCAAAGAGAGCGGCCCGGCGTCGCcagtgtttttcattctttccccTGGAGTAGACCCCCTGAAAGATGTAGAATCACTTGGTAAGAAGCTTGGCTTCACCATAGACTTGGGAAAGCTGCACAATGTGTCCCTGGGGCAGGGGCAGGAGGCTGTGGCTGAAGTGGCCATGGAAAAAGCTTCAAAGGAGGGCCACTGGGTTATCCTGCAGAATATCCACCTGGTAGCAAAGTGGCTGGGCAACCTGGAGAAACTGCTGGAGCGCTACAGTGAGGGCAGTCACCCAGACTACCGTGTGTTCATGAGCGCCGAGCCGGCACCCACCGCGCCCGAGCACATCATCCCCCAGGGCATCCTGGAGAACTCGATCAAGATCACCAATGAGCCTCCCACTGGCATGCTGGCCAACCTGCACAGCGCCCTGGACAACTTCGACCAGGATATTCTAGACCAGTGCTCCCGGGAGCAAGAGTTCAAGACCATCCTGTTCTCCCTCTGCTACTTTCACGCATGTGTCGCAGAGCGCCGTAAGTTTGGGCCTCAGGGTTGGAATCGCAAGTACCCCTTTAACACCGGAGACCTCACCATCTCGGTTAATGTGCTTTACAACTACCTGGAAGCCAACTCGCAGGTGCCGTGGGAGGACCTGCGTTACTTATTTGGAGAGATCATGTATGGTGGCCACATTACCGACGACTGGGACAGGAGGCTGTGTCGCACCTACCTGGAGGAGTACATGCAGCCCAACCAGttcGACAGAAAGCTGGCTTTAGCTCCTGGGTTTGTagtcccttcaaacctggattACCAAGGATACCACCGCTACATTGATGAGATGCTGCCACATGAAAGCCCAGTGCATTATGGACTACATCCTAATGCTGAAATAGAATTCCTGACTGTCACTTCTGACAATCTGTTCCACACACTGCTGGAGCTCCAGCCCAGAGACGCTGTGATCGGGGAGGGGGCCTCCCAAACCGTGGAAGAGAAGgtgaaaaCAATCCTTGATGATATTTCGGAGAAGTTGCCAGAGGAGTATAACATGTCAGACATTACCTCCAAGACGGCAGAACGTTCTCCCTATATCTTAGTATGTTTTCAGGAGTGTGAACGAATGAATACTCTCCTATATGAAATCAGACGCTCGCTGAAGGAATTGGATTTGGGACTGAAGGGTGAGTTGGCAATTTCCTCAGAGATGGAGCAACTGCAGACAGCTCTTTTCTTTGATAATGTTCCTGACACCTGGACCAAGCTAGCATATCCATCAACATACAGTCTTGCACAGTACAATGACGTTCTCCTGCGATGCCGAGAGCTGGACAGCTGGACCCAAGACCTGGCCCTGCCCAGCGTTGTGTGGCTTGCTGGCCTCTTCAACCCCCAGTCTTTCCTCACAGCTGTAATGCAGAGTTTAGCAAGGAAAAACGAATGGCCTTTGGATAAGATGCATCTGACGGTGGATGTCACAAAAAAATTCAAGGAAGAATTTAACCAACCTGCCCGAGAAGGGGCATACGTCTATGGCTTATACATGGAGGGTGCCAGATGGGACACGCAGGGCGGAAACATCACGGAGGCCCGTCTGAAGGAGCTCACGCCCATCATGCCTGTGATGTTCGTCAGGGCCATTCCCAACGACAGGCAGGAGACGAGGAACATCTACGAGTGCCCGGTGTACAAGACCAAGTTCAGAGGTGCCACCTATGTTTGGACGTTTAGCCTGAAGACAAAAGAACGGCCGGCGAAGTGGGTTCTGGCGGGCGTGGCGCTGCTCCTGAGCGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160562 lncRNA downstream 40603 12493178 ~ 12495215 (-) True G128070
TU160530 lncRNA downstream 148234 12358559 ~ 12387584 (-) False G128045
TU160531 lncRNA downstream 148234 12358559 ~ 12387584 (-) True G128045
TU160449 lncRNA downstream 377335 12154508 ~ 12158483 (-) True G127976
TU160341 lncRNA downstream 623996 11908986 ~ 11911822 (-) True G127899
TU160632 lncRNA upstream 152760 12697177 ~ 12697668 (-) False AMCG00001041
TU160682 lncRNA upstream 181277 12725694 ~ 12731187 (-) False AMCG00001039
TU160683 lncRNA upstream 181277 12725694 ~ 12731187 (-) False AMCG00001039
TU160685 lncRNA upstream 181277 12725694 ~ 12731187 (-) True AMCG00001039
TU160675 lncRNA upstream 220495 12764912 ~ 12810017 (-) True G128155
AMCG00001024 mRNA downstream 120427 12400510 ~ 12415391 (-) True AMCG00001024
AMCG00001020 mRNA downstream 248201 12286167 ~ 12287617 (-) True AMCG00001020
AMCG00001021 mRNA downstream 324910 12193199 ~ 12210908 (-) True AMCG00001021
AMCG00001014 mRNA downstream 394346 12128565 ~ 12141472 (-) True AMCG00001014
AMCG00001015 mRNA downstream 425218 12094466 ~ 12110600 (-) True AMCG00001015
AMCG00001033 mRNA upstream 26 12544443 ~ 12601997 (-) True AMCG00001033
AMCG00001031 mRNA upstream 61945 12606362 ~ 12617955 (-) True AMCG00001031
AMCG00001034 mRNA upstream 92327 12636744 ~ 12641982 (-) True AMCG00001034
AMCG00001032 mRNA upstream 108194 12652611 ~ 12658389 (-) True AMCG00001032
AMCG00001030 mRNA upstream 131605 12676022 ~ 12679428 (-) True AMCG00001030
TU159975 other downstream 1835470 10697707 ~ 10700348 (-) False AMCG00000960
TU159787 other downstream 2257607 10274687 ~ 10278211 (-) True G127443
TU159607 other downstream 3116493 9418996 ~ 9419325 (-) True G127292
TU159288 other downstream 4890096 7629915 ~ 7645722 (-) True G127039
TU159187 other downstream 5802001 6711958 ~ 6733817 (-) False AMCG00000888
TU160686 other upstream 187767 12732184 ~ 12751516 (-) True G128160
TU160833 other upstream 812566 13356983 ~ 13359770 (-) True AMCG00001061
TU161258 other upstream 2048282 14592699 ~ 14598570 (-) True G128628
TU161398 other upstream 2634824 15179241 ~ 15180322 (-) True G128741
TU161519 other upstream 2819650 15364067 ~ 15433469 (-) True AMCG00001118

Expression Profile