RNA id: AMCG00001036


Basic Information

Item Value
RNA id AMCG00001036
length 1008
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00001036
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12688778 ~ 12690656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTACGTCTATACTTGGGGAAGAACCACGTTTTGGAACTACTCCTTTAGCCATGCTGGCTGCGACTTGCAACAAAATTGGTAACACGAGTCCTCTGACCACTTTACCTGACTCCAGCGCTTTCGCAAAGGGCGGATTTCACCCCTGGAAGAGATCTTCTTCAAGCTGCAACTTGGGATCAAGCCTCTCTGGGTTTGCTGTGGCGACGAGCCGGGGAACCACCGGACTTACCAGCACTACTGGAACCGGCAACAGCGCTTTCTGCTTGGCCTCCACCTCGCCCACCTCCTCTGCGTTCACCACCGAATACAGCAGCCTGTTCTCCAACTCCGCCAGCGTCTCGTCGCAAGACTCGGGACAGTCGGCGTTTATCTCCAAAGTCCACACTTCAGCAGAGACCCTGTACCCAAGGGTAGGGATGGCCCACCCGTACGAATCGTGGTACAAATCTGGCTTTCACTCGACCATCTCCAGCGAAGTGGCCAATGGAGCGTCCTCCTGGTGGGATGTTCACACCAACCCAAGCTCCTGGCTGGAAGTGCAAAACCCAGCCAGCACTCTGCAGACCTCCTTACACTCTGGGACCCCCCAGGCCACCCTGCACTCCCAGCTCAGCGGCTACAACCCCGATTTTTCCACTTTGACACACTCTGCCTTCAGCTCCACTGGGATAAGCCCGACAGCTTCTCATCTGCTGTCCACTAGCCAGCACCTGTTGACGCAGGAAGGTTTCAAAACGGTGCTCCCCTCCTACACGGACTCCTCCACAGCCAACGCCATGATTTCCGGAGCCAGCACGGGCATAGGGGGCTCGGCCAGGTCGGCTAGGAGCAAACACATTAAGACCCACAATGGCGGAGGAGGAGGCAAAAAGGGAAGCGACAGTGACACCGACACCAGTAACCTTGAGACCCCCAGATCCGAATCGCCAGAACTCATTCTGGAAGGGGTGAACTCCGGCAGGGTGCAGGGCAAAGACCCCACTCCAGGACCAAACGAGTcctaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09199 SP9; transcription factor Sp9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160610 lncRNA upstream 12604 12638985 ~ 12676174 (+) True G128107
TU160600 lncRNA upstream 33606 12606039 ~ 12655172 (+) True G128101
TU160612 lncRNA upstream 48890 12638985 ~ 12639888 (+) False G128107
TU160571 lncRNA upstream 148460 12540081 ~ 12540318 (+) True G128074
TU160510 lncRNA upstream 326626 12360915 ~ 12362152 (+) False AMCG00001022
TU160703 lncRNA downstream 146995 12837651 ~ 12841008 (+) False G128171
TU160704 lncRNA downstream 146995 12837651 ~ 12841008 (+) True G128171
TU160823 lncRNA downstream 666835 13357491 ~ 13382644 (+) False G128255
TU160825 lncRNA downstream 666835 13357491 ~ 13359738 (+) True G128255
TU160870 lncRNA downstream 771010 13461666 ~ 13463482 (+) True G128294
AMCG00001025 mRNA upstream 152712 12529789 ~ 12536066 (+) True AMCG00001025
AMCG00001028 mRNA upstream 159674 12523818 ~ 12529104 (+) True AMCG00001028
AMCG00001027 mRNA upstream 170826 12497386 ~ 12517952 (+) True AMCG00001027
AMCG00001026 mRNA upstream 193561 12469940 ~ 12495217 (+) True AMCG00001026
AMCG00001029 mRNA upstream 233220 12444860 ~ 12455558 (+) True AMCG00001029
AMCG00001037 mRNA downstream 6563 12697219 ~ 12707783 (+) True AMCG00001037
AMCG00001047 mRNA downstream 121758 12812414 ~ 12813367 (+) True AMCG00001047
AMCG00001052 mRNA downstream 306456 12997112 ~ 12998946 (+) True AMCG00001052
AMCG00001050 mRNA downstream 312279 13002935 ~ 13004035 (+) True AMCG00001050
AMCG00001049 mRNA downstream 319040 13009696 ~ 13023750 (+) True AMCG00001049
TU160309 other upstream 677353 11999664 ~ 12011425 (+) True AMCG00001002
TU159756 other upstream 2534591 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 4068583 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10992531 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 11088139 1599696 ~ 1600639 (+) False AMCG00000723
TU161370 other downstream 2479255 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 2718456 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 5332404 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 5855237 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 5864495 18555151 ~ 18558174 (+) False G129442

Expression Profile